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Items: 1 to 20 of 248

1.

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor.

Kohany O, Gentles AJ, Hankus L, Jurka J.

BMC Bioinformatics. 2006 Oct 25;7:474.

2.

Repbase Update, a database of eukaryotic repetitive elements.

Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J.

Cytogenet Genome Res. 2005;110(1-4):462-7. Review.

PMID:
16093699
3.

VisualRepbase: an interface for the study of occurrences of transposable element families.

Tempel S, Jurka M, Jurka J.

BMC Bioinformatics. 2008 Aug 18;9:345. doi: 10.1186/1471-2105-9-345.

4.

WindowMasker: window-based masker for sequenced genomes.

Morgulis A, Gertz EM, Schäffer AA, Agarwala R.

Bioinformatics. 2006 Jan 15;22(2):134-41. Epub 2005 Nov 15.

PMID:
16287941
5.

Repbase Update, a database of repetitive elements in eukaryotic genomes.

Bao W, Kojima KK, Kohany O.

Mob DNA. 2015 Jun 2;6:11. doi: 10.1186/s13100-015-0041-9. eCollection 2015.

6.

Dfam: a database of repetitive DNA based on profile hidden Markov models.

Wheeler TJ, Clements J, Eddy SR, Hubley R, Jones TA, Jurka J, Smit AF, Finn RD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D70-82. doi: 10.1093/nar/gks1265. Epub 2012 Nov 30.

7.

ESTuber db: an online database for Tuber borchii EST sequences.

Lazzari B, Caprera A, Cosentino C, Stella A, Milanesi L, Viotti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S13.

8.
9.

Database resources of the National Center for Biotechnology Information.

Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, DiCuccio M, Edgar R, Federhen S, Geer LY, Helmberg W, Kapustin Y, Kenton DL, Khovayko O, Lipman DJ, Madden TL, Maglott DR, Ostell J, Pruitt KD, Schuler GD, Schriml LM, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Suzek TO, Tatusov R, Tatusova TA, Wagner L, Yaschenko E.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D173-80.

10.

Kangaroo--a pattern-matching program for biological sequences.

Betel D, Hogue CW.

BMC Bioinformatics. 2002 Jul 31;3:20.

11.

ACLAME: a CLAssification of Mobile genetic Elements.

Leplae R, Hebrant A, Wodak SJ, Toussaint A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D45-9.

12.

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.

13.

Remote access to ACNUC nucleotide and protein sequence databases at PBIL.

Gouy M, Delmotte S.

Biochimie. 2008 Apr;90(4):555-62. Epub 2007 Jul 15.

PMID:
17825976
14.

The Lactamase Engineering Database: a critical survey of TEM sequences in public databases.

Thai QK, Bös F, Pleiss J.

BMC Genomics. 2009 Aug 21;10:390. doi: 10.1186/1471-2164-10-390.

15.

SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum.

Liu F, Chen P, Cui SJ, Wang ZQ, Han ZG.

BMC Genomics. 2008 Jun 26;9:304. doi: 10.1186/1471-2164-9-304.

16.

FeatureExtract--extraction of sequence annotation made easy.

Wernersson R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W567-9.

17.

Using GenBank.

Wheeler D.

Methods Mol Biol. 2007;406:23-59.

PMID:
18287687
18.

Tracembler--software for in-silico chromosome walking in unassembled genomes.

Dong Q, Wilkerson MD, Brendel V.

BMC Bioinformatics. 2007 May 9;8:151.

19.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

20.

T2prhd: a tool to study the patterns of repeat evolution.

Sipos B, Somogyi K, Andó I, Pénzes Z.

BMC Bioinformatics. 2008 Jan 18;9:27. doi: 10.1186/1471-2105-9-27.

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