Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 160

1.

Codon usage and selection on proteins.

Plotkin JB, Dushoff J, Desai MM, Fraser HB.

J Mol Evol. 2006 Nov;63(5):635-53. Epub 2006 Oct 14.

PMID:
17043750
2.

The comparative method rules! Codon volatility cannot detect positive Darwinian selection using a single genome sequence.

Dagan T, Graur D.

Mol Biol Evol. 2005 Mar;22(3):496-500. Epub 2004 Nov 3. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1158.

PMID:
15525696
3.

Evolutionary genomics: codon volatility does not detect selection.

Chen Y, Emerson JJ, Martin TM.

Nature. 2005 Jan 20;433(7023):E6-7; discussion E7-8.

PMID:
15662371
4.

Large-scale analyses of synonymous substitution rates can be sensitive to assumptions about the process of mutation.

Aris-Brosou S, Bielawski JP.

Gene. 2006 Aug 15;378:58-64. Epub 2006 May 22.

PMID:
16797879
5.

Estimating selection intensity on synonymous codon usage in a nonequilibrium population.

Zeng K, Charlesworth B.

Genetics. 2009 Oct;183(2):651-62, 1SI-23SI. doi: 10.1534/genetics.109.101782. Epub 2009 Jul 20.

6.

Recent selection on synonymous codon usage in Drosophila.

Kliman RM.

J Mol Evol. 1999 Sep;49(3):343-51.

PMID:
10473775
8.

Codon volatility of hemagglutinin genes of H5N1 avian influenza viruses from different clades.

Auewarakul P, Chatsurachai S, Kongchanagul A, Kanrai P, Upala S, Suriyaphol P, Puthavathana P.

Virus Genes. 2009 Jun;38(3):404-7. doi: 10.1007/s11262-009-0349-y. Epub 2009 Mar 24.

PMID:
19308713
9.
10.

Selection on codon usage for error minimization at the protein level.

Archetti M.

J Mol Evol. 2004 Sep;59(3):400-15.

PMID:
15553093
11.

Not so different after all: a comparison of methods for detecting amino acid sites under selection.

Kosakovsky Pond SL, Frost SD.

Mol Biol Evol. 2005 May;22(5):1208-22. Epub 2005 Feb 9.

PMID:
15703242
12.
13.
14.

Selective pressures at a codon-level predict deleterious mutations in human disease genes.

Arbiza L, Duchi S, Montaner D, Burguet J, Pantoja-Uceda D, Pineda-Lucena A, Dopazo J, Dopazo H.

J Mol Biol. 2006 May 19;358(5):1390-404. Epub 2006 Mar 15.

PMID:
16584746
15.

Likelihood-based clustering (LiBaC) for codon models, a method for grouping sites according to similarities in the underlying process of evolution.

Bao L, Gu H, Dunn KA, Bielawski JP.

Mol Biol Evol. 2008 Sep;25(9):1995-2007. doi: 10.1093/molbev/msn145. Epub 2008 Jun 26.

PMID:
18586695
16.

Why are translationally sub-optimal synonymous codons used in Escherichia coli?

Smith NG, Eyre-Walker A.

J Mol Evol. 2001 Sep;53(3):225-36.

PMID:
11523009
18.

Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage.

Yang Z, Nielsen R.

Mol Biol Evol. 2008 Mar;25(3):568-79. doi: 10.1093/molbev/msm284. Epub 2008 Jan 3.

PMID:
18178545
19.

Estimating selection pressures from limited comparative data.

Plotkin JB, Dushoff J, Desai MM, Fraser HB.

Mol Biol Evol. 2006 Aug;23(8):1457-9. Epub 2006 Jun 5.

PMID:
16754640
20.

Reduced selection for codon usage bias in Drosophila miranda.

Bachtrog D.

J Mol Evol. 2007 May;64(5):586-90. Epub 2007 Apr 24.

PMID:
17457633

Supplemental Content

Support Center