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Items: 1 to 20 of 222

1.

GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.

Sealfon RS, Hibbs MA, Huttenhower C, Myers CL, Troyanskaya OG.

BMC Bioinformatics. 2006 Oct 10;7:443.

3.

NetAffx Gene Ontology Mining Tool: a visual approach for microarray data analysis.

Cheng J, Sun S, Tracy A, Hubbell E, Morris J, Valmeekam V, Kimbrough A, Cline MS, Liu G, Shigeta R, Kulp D, Siani-Rose MA.

Bioinformatics. 2004 Jun 12;20(9):1462-3. Epub 2004 Feb 12.

PMID:
14962933
4.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

5.

GoFigure: automated Gene Ontology annotation.

Khan S, Situ G, Decker K, Schmidt CJ.

Bioinformatics. 2003 Dec 12;19(18):2484-5.

PMID:
14668239
6.
7.

Data exploration tools for the Gene Ontology database.

Shoop E, Casaes P, Onsongo G, Lesnett L, Petursdottir EO, Donkor EK, Tkach D, Cosimini M.

Bioinformatics. 2004 Dec 12;20(18):3442-54. Epub 2004 Jul 22.

PMID:
15271779
8.

INTEGRATOR: interactive graphical search of large protein interactomes over the Web.

Chang AN, McDermott J, Frazier Z, Guerquin M, Samudrala R.

BMC Bioinformatics. 2006 Mar 16;7:146.

9.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

10.

PROTEIOS: an open source proteomics initiative.

Gärdén P, Alm R, Häkkinen J.

Bioinformatics. 2005 May 1;21(9):2085-7. Epub 2005 Feb 3.

PMID:
15691852
11.
12.

GOChase: correcting errors from Gene Ontology-based annotations for gene products.

Park YR, Park CH, Kim JH.

Bioinformatics. 2005 Mar;21(6):829-31. Epub 2004 Oct 28.

PMID:
15513987
13.

PathSys: integrating molecular interaction graphs for systems biology.

Baitaluk M, Qian X, Godbole S, Raval A, Ray A, Gupta A.

BMC Bioinformatics. 2006 Feb 7;7:55.

14.

PRODISTIN Web Site: a tool for the functional classification of proteins from interaction networks.

Baudot A, Martin D, Mouren P, Chevenet F, Guénoche A, Jacq B, Brun C.

Bioinformatics. 2006 Jan 15;22(2):248-50. Epub 2005 Nov 3.

PMID:
16269417
15.

DIG--a system for gene annotation and functional discovery.

Delong M, Yao G, Wang Q, Dobra A, Black EP, Chang JT, Bild A, West M, Nevins JR, Dressman H.

Bioinformatics. 2005 Jul 1;21(13):2957-9. Epub 2005 May 3.

PMID:
15870167
16.

SimCT: a generic tool to visualize ontology-based relationships for biological objects.

Herrmann C, Bérard S, Tichit L.

Bioinformatics. 2009 Dec 1;25(23):3197-8. doi: 10.1093/bioinformatics/btp553. Epub 2009 Sep 23.

17.

Software tool for researching annotations of proteins: open-source protein annotation software with data visualization.

Bhatia VN, Perlman DH, Costello CE, McComb ME.

Anal Chem. 2009 Dec 1;81(23):9819-23. doi: 10.1021/ac901335x.

18.

SCOWLP: a web-based database for detailed characterization and visualization of protein interfaces.

Teyra J, Doms A, Schroeder M, Pisabarro MT.

BMC Bioinformatics. 2006 Mar 2;7:104.

19.

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research.

Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, Robles M.

Bioinformatics. 2005 Sep 15;21(18):3674-6. Epub 2005 Aug 4.

PMID:
16081474
20.

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