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Items: 1 to 20 of 237

1.

Algorithmic approaches for computing elementary modes in large biochemical reaction networks.

Klamt S, Gagneur J, von Kamp A.

Syst Biol (Stevenage). 2005 Dec;152(4):249-55.

PMID:
16986267
2.
3.

Large-scale computation of elementary flux modes with bit pattern trees.

Terzer M, Stelling J.

Bioinformatics. 2008 Oct 1;24(19):2229-35. doi: 10.1093/bioinformatics/btn401. Epub 2008 Aug 1.

PMID:
18676417
4.

Generalized concept of minimal cut sets in biochemical networks.

Klamt S.

Biosystems. 2006 Feb-Mar;83(2-3):233-47. Epub 2005 Nov 21.

PMID:
16303240
5.

Pathway classification of TCA cycle.

Pérès S, Beurton-Aimar M, Mazat JP.

Syst Biol (Stevenage). 2006 Sep;153(5):369-71.

PMID:
16986319
6.

Enumerating constrained elementary flux vectors of metabolic networks.

Urbanczik R.

IET Syst Biol. 2007 Sep;1(5):274-9.

PMID:
17907675
7.

A structured approach for the engineering of biochemical network models, illustrated for signalling pathways.

Breitling R, Gilbert D, Heiner M, Orton R.

Brief Bioinform. 2008 Sep;9(5):404-21. doi: 10.1093/bib/bbn026. Epub 2008 Jun 23. Review.

PMID:
18573813
8.

Modes and cuts in metabolic networks: complexity and algorithms.

Acuña V, Chierichetti F, Lacroix V, Marchetti-Spaccamela A, Sagot MF, Stougie L.

Biosystems. 2009 Jan;95(1):51-60. doi: 10.1016/j.biosystems.2008.06.015. Epub 2008 Aug 3. Review.

PMID:
18722501
9.

Investigating the dynamic behavior of biochemical networks using model families.

Haunschild MD, Freisleben B, Takors R, Wiechert W.

Bioinformatics. 2005 Apr 15;21(8):1617-25. Epub 2004 Dec 16.

PMID:
15604106
10.

A quadratic programming approach for decomposing steady-state metabolic flux distributions onto elementary modes.

Schwartz JM, Kanehisa M.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii204-5.

PMID:
16204104
11.

An integrated computational environment for elementary modes analysis of biochemical networks.

Maia P, Vilaça P, Rocha I, Pont M, Tomb JF, Rocha M.

Int J Data Min Bioinform. 2012;6(4):382-95.

PMID:
23155769
12.

A critical examination of stoichiometric and path-finding approaches to metabolic pathways.

Planes FJ, Beasley JE.

Brief Bioinform. 2008 Sep;9(5):422-36. doi: 10.1093/bib/bbn018. Epub 2008 Apr 24. Review.

PMID:
18436574
13.

FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps.

Klamt S, Stelling J, Ginkel M, Gilles ED.

Bioinformatics. 2003 Jan 22;19(2):261-9.

PMID:
12538248
14.

Identification of flux regulation coefficients from elementary flux modes: A systems biology tool for analysis of metabolic networks.

Nookaew I, Meechai A, Thammarongtham C, Laoteng K, Ruanglek V, Cheevadhanarak S, Nielsen J, Bhumiratana S.

Biotechnol Bioeng. 2007 Aug 15;97(6):1535-49.

PMID:
17238207
15.

Expansion of signal transduction networks.

Binder B, Ebenhöh O, Hashimoto K, Heinrich R.

Syst Biol (Stevenage). 2006 Sep;153(5):364-8.

PMID:
16986318
16.

Metabolic network properties help assign weights to elementary modes to understand physiological flux distributions.

Wang Q, Yang Y, Ma H, Zhao X.

Bioinformatics. 2007 May 1;23(9):1049-52. Epub 2007 Mar 6.

PMID:
17341495
17.

METATOOL: for studying metabolic networks.

Pfeiffer T, Sánchez-Valdenebro I, Nuño JC, Montero F, Schuster S.

Bioinformatics. 1999 Mar;15(3):251-7.

PMID:
10222413
18.

Cell++--simulating biochemical pathways.

Sanford C, Yip ML, White C, Parkinson J.

Bioinformatics. 2006 Dec 1;22(23):2918-25. Epub 2006 Oct 11.

PMID:
17038347
19.

Biological networks in metabolic P systems.

Manca V, Bianco L.

Biosystems. 2008 Mar;91(3):489-98. Epub 2007 Jul 14.

PMID:
17761386
20.

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