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Items: 1 to 20 of 111

1.

Statistical thermodynamics and kinetics of DNA multiplex hybridization reactions.

Horne MT, Fish DJ, Benight AS.

Biophys J. 2006 Dec 1;91(11):4133-53. Epub 2006 Sep 8.

2.

DNA sequence context and multiplex hybridization reactions: melting studies of heteromorphic duplex DNA complexes.

Riccelli PV, Hall TS, Pancoska P, Mandell KE, Benight AS.

J Am Chem Soc. 2003 Jan 8;125(1):141-50.

PMID:
12515515
3.

Discrimination between perfect and mismatched duplexes with oligonucleotide gel microchips: role of thermodynamic and kinetic effects during hybridization.

Sorokin NV, Chechetkin VR, Livshits MA, Pan'kov SV, Donnikov MY, Gryadunov DA, Lapa SA, Zasedatelev AS.

J Biomol Struct Dyn. 2005 Jun;22(6):725-34.

PMID:
15842177
4.

DNA multiplex hybridization on microarrays and thermodynamic stability in solution: a direct comparison.

Fish DJ, Horne MT, Brewood GP, Goodarzi JP, Alemayehu S, Bhandiwad A, Searles RP, Benight AS.

Nucleic Acids Res. 2007;35(21):7197-208. Epub 2007 Oct 18.

5.

Microarray temperature optimization using hybridization kinetics.

Blair S, Williams L, Bishop J, Chagovetz A.

Methods Mol Biol. 2009;529:171-96. doi: 10.1007/978-1-59745-538-1_12.

PMID:
19381979
6.
7.

The importance of thermodynamic equilibrium for high throughput gene expression arrays.

Bhanot G, Louzoun Y, Zhu J, DeLisi C.

Biophys J. 2003 Jan;84(1):124-35.

8.

Sequence-dependent theory of oligonucleotide hybridization kinetics.

Marimuthu K, Chakrabarti R.

J Chem Phys. 2014 May 7;140(17):175104. doi: 10.1063/1.4873585.

PMID:
24811668
9.

DNA probes: applications of the principles of nucleic acid hybridization.

Wetmur JG.

Crit Rev Biochem Mol Biol. 1991;26(3-4):227-59. Review.

PMID:
1718662
10.
11.

A competitive kinetic model of nucleic acid surface hybridization in the presence of point mutants.

Bishop J, Blair S, Chagovetz AM.

Biophys J. 2006 Feb 1;90(3):831-40. Epub 2005 Nov 11.

12.

A new approach to determine the effect of mismatches on kinetic parameters in DNA hybridization using an optical biosensor.

Gotoh M, Hasegawa Y, Shinohara Y, Shimizu M, Tosu M.

DNA Res. 1995 Dec 31;2(6):285-93.

PMID:
8867803
13.

Position dependent mismatch discrimination on DNA microarrays - experiments and model.

Naiser T, Kayser J, Mai T, Michel W, Ott A.

BMC Bioinformatics. 2008 Dec 1;9:509. doi: 10.1186/1471-2105-9-509.

14.

On-chip hybridization kinetics for optimization of gene expression experiments.

Khomyakova E, Livshits MA, Steinhauser MC, Dauphinot L, Cohen-Kaminsky S, Rossier J, Soussaline F, Potier MC.

Biotechniques. 2008 Jan;44(1):109-17.

15.

Hybridization kinetics of double-stranded DNA probes for rapid molecular analysis.

Gidwani V, Riahi R, Zhang DD, Wong PK.

Analyst. 2009 Aug;134(8):1675-81. doi: 10.1039/b906077d. Epub 2009 May 22.

PMID:
20448937
16.

Hybridization of single-stranded DNA targets to immobilized complementary DNA probes: comparison of hairpin versus linear capture probes.

Riccelli PV, Merante F, Leung KT, Bortolin S, Zastawny RL, Janeczko R, Benight AS.

Nucleic Acids Res. 2001 Feb 15;29(4):996-1004.

17.

Kinetics and dynamics of DNA hybridization.

Yin Y, Zhao XS.

Acc Chem Res. 2011 Nov 15;44(11):1172-81. doi: 10.1021/ar200068j. Epub 2011 Jun 30.

PMID:
21718008
18.

Strong position-dependent effects of sequence mismatches on signal ratios measured using long oligonucleotide microarrays.

Rennie C, Noyes HA, Kemp SJ, Hulme H, Brass A, Hoyle DC.

BMC Genomics. 2008 Jul 3;9:317. doi: 10.1186/1471-2164-9-317.

19.
20.

Sensitivity, specificity, and the hybridization isotherms of DNA chips.

Halperin A, Buhot A, Zhulina EB.

Biophys J. 2004 Feb;86(2):718-30.

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