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Items: 1 to 20 of 92

1.

Scale-invariant structure of strongly conserved sequence in genomic intersections and alignments.

Salerno W, Havlak P, Miller J.

Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):13121-5. Epub 2006 Aug 21.

2.

Widespread occurrence of power-law distributions in inter-repeat distances shaped by genome dynamics.

Klimopoulos A, Sellis D, Almirantis Y.

Gene. 2012 May 10;499(1):88-98. doi: 10.1016/j.gene.2012.02.005. Epub 2012 Feb 18.

PMID:
22370293
3.

PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences.

Elnitski L, Riemer C, Petrykowska H, Florea L, Schwartz S, Miller W, Hardison R.

Genomics. 2002 Dec;80(6):681-90.

PMID:
12504859
4.

Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis.

Yavatkar AS, Lin Y, Ross J, Fann Y, Brody T, Odenwald WF.

BMC Genomics. 2008 Feb 28;9:106. doi: 10.1186/1471-2164-9-106.

5.

Imprinted genes show unique patterns of sequence conservation.

Hutter B, Bieg M, Helms V, Paulsen M.

BMC Genomics. 2010 Nov 22;11:649. doi: 10.1186/1471-2164-11-649.

6.

Genome-wide in silico identification of new conserved and functional retinoic acid receptor response elements (direct repeats separated by 5 bp).

Lalevée S, Anno YN, Chatagnon A, Samarut E, Poch O, Laudet V, Benoit G, Lecompte O, Rochette-Egly C.

J Biol Chem. 2011 Sep 23;286(38):33322-34. doi: 10.1074/jbc.M111.263681. Epub 2011 Jul 29.

7.
8.

Comparative analysis of noncoding sequences of orthologous bovine and human gene pairs.

Miziara MN, Riggs PK, Amaral ME.

Genet Mol Res. 2004 Dec 30;3(4):465-73.

9.

MicroRNA genes derived from repetitive elements and expanded by segmental duplication events in mammalian genomes.

Yuan Z, Sun X, Liu H, Xie J.

PLoS One. 2011 Mar 16;6(3):e17666. doi: 10.1371/journal.pone.0017666.

10.

Ultraconserved elements: genomics, function and disease.

Baira E, Greshock J, Coukos G, Zhang L.

RNA Biol. 2008 Jul-Sep;5(3):132-4. Epub 2008 Jul 25. Review.

PMID:
18708752
12.

Conserved noncoding elements follow power-law-like distributions in several genomes as a result of genome dynamics.

Polychronopoulos D, Sellis D, Almirantis Y.

PLoS One. 2014 May 2;9(5):e95437. doi: 10.1371/journal.pone.0095437. eCollection 2014.

13.

A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block.

Breen J, Wicker T, Kong X, Zhang J, Ma W, Paux E, Feuillet C, Appels R, Bellgard M.

BMC Plant Biol. 2010 May 27;10:98. doi: 10.1186/1471-2229-10-98.

14.

Correlation of microsynteny conservation and disease gene distribution in mammalian genomes.

Lovell SC, Li X, Weerasinghe NR, Hentges KE.

BMC Genomics. 2009 Nov 12;10:521. doi: 10.1186/1471-2164-10-521.

15.

Algorithms for locating extremely conserved elements in multiple sequence alignments.

Tseng HH, Tompa M.

BMC Bioinformatics. 2009 Dec 18;10:432. doi: 10.1186/1471-2105-10-432.

16.
17.

Genomic data analysis using DNA structure: an analysis of conserved nongenic sequences and ultraconserved elements.

Gardiner EJ, Hirons L, Hunter CA, Willett P.

J Chem Inf Model. 2006 Mar-Apr;46(2):753-61.

PMID:
16563006
18.

Hox cluster characterization of Banna caecilian (Ichthyophis bannanicus) provides hints for slow evolution of its genome.

Wu R, Liu Q, Meng S, Zhang P, Liang D.

BMC Genomics. 2015 Jun 18;16:468. doi: 10.1186/s12864-015-1684-0.

19.

Active conservation of noncoding sequences revealed by three-way species comparisons.

Dubchak I, Brudno M, Loots GG, Pachter L, Mayor C, Rubin EM, Frazer KA.

Genome Res. 2000 Sep;10(9):1304-6.

20.

Statistical power of phylo-HMM for evolutionarily conserved element detection.

Fan X, Zhu J, Schadt EE, Liu JS.

BMC Bioinformatics. 2007 Oct 5;8:374.

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