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Items: 1 to 20 of 149

1.

Topology of resultant networks shaped by evolutionary pressure.

Ma'ayan A, Lipshtat A, Iyengar R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2006 Jun;73(6 Pt 1):061912. Epub 2006 Jun 19.

2.

Functional and evolutionary inference in gene networks: does topology matter?

Siegal ML, Promislow DE, Bergman A.

Genetica. 2007 Jan;129(1):83-103. Epub 2006 Aug 8.

PMID:
16897451
3.

The small-world dynamics of tree networks and data mining in phyloinformatics.

Piel WH, Sanderson MJ, Donoghue MJ.

Bioinformatics. 2003 Jun 12;19(9):1162-8.

PMID:
12801879
4.
5.

A toolbox model of evolution of metabolic pathways on networks of arbitrary topology.

Pang TY, Maslov S.

PLoS Comput Biol. 2011 May;7(5):e1001137. doi: 10.1371/journal.pcbi.1001137. Epub 2011 May 19.

6.
7.

Growing self-organizing trees for autonomous hierarchical clustering.

Doan NQ, Azzag H, Lebbah M.

Neural Netw. 2013 May;41:85-95. doi: 10.1016/j.neunet.2012.08.015. Epub 2012 Sep 19.

PMID:
23041056
8.

Transportation network with fluctuating input/output designed by the bio-inspired Physarum algorithm.

Watanabe S, Takamatsu A.

PLoS One. 2014 Feb 26;9(2):e89231. doi: 10.1371/journal.pone.0089231. eCollection 2014.

9.

The topology of the bacterial co-conserved protein network and its implications for predicting protein function.

Karimpour-Fard A, Leach SM, Hunter LE, Gill RT.

BMC Genomics. 2008 Jun 30;9:313. doi: 10.1186/1471-2164-9-313.

10.

Emergence of scale-free distribution in protein-protein interaction networks based on random selection of interacting domain pairs.

Nacher JC, Hayashida M, Akutsu T.

Biosystems. 2009 Feb;95(2):155-9. doi: 10.1016/j.biosystems.2008.10.002. Epub 2008 Nov 1.

PMID:
19010382
11.
12.

Discrete particle swarm optimization for identifying community structures in signed social networks.

Cai Q, Gong M, Shen B, Ma L, Jiao L.

Neural Netw. 2014 Oct;58:4-13. doi: 10.1016/j.neunet.2014.04.006. Epub 2014 May 13.

PMID:
24856248
13.

Gene expression complex networks: synthesis, identification, and analysis.

Lopes FM, Cesar RM, Costa Lda F.

J Comput Biol. 2011 Oct;18(10):1353-67. doi: 10.1089/cmb.2010.0118. Epub 2011 May 6.

PMID:
21548810
14.

Onset of traffic congestion in complex networks.

Zhao L, Lai YC, Park K, Ye N.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Feb;71(2 Pt 2):026125. Epub 2005 Feb 24.

PMID:
15783396
15.

An efficient sequential learning algorithm for growing and pruning RBF (GAP-RBF) networks.

Huang GB, Saratchandran P, Sundararajan N.

IEEE Trans Syst Man Cybern B Cybern. 2004 Dec;34(6):2284-92.

PMID:
15619929
16.

Evolutionary optimization of a hierarchical object recognition model.

Schneider G, Wersing H, Sendhoff B, Körner E.

IEEE Trans Syst Man Cybern B Cybern. 2005 Jun;35(3):426-37.

PMID:
15971912
17.

Modeling and analyzing complex biological networks incooperating experimental information on both network topology and stable states.

Zou YM.

Bioinformatics. 2010 Aug 15;26(16):2037-41. doi: 10.1093/bioinformatics/btq333. Epub 2010 Jul 2.

PMID:
20601441
18.

Scaling laws in critical random Boolean networks with general in- and out-degree distributions.

Möller M, Drossel B.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 May;87(5):052106. Epub 2013 May 6.

PMID:
23767486
19.

Functional inference of complex anatomical tendinous networks at a macroscopic scale via sparse experimentation.

Saxena A, Lipson H, Valero-Cuevas FJ.

PLoS Comput Biol. 2012;8(11):e1002751. doi: 10.1371/journal.pcbi.1002751. Epub 2012 Nov 8.

20.

Ranking stability and super-stable nodes in complex networks.

Ghoshal G, Barabási AL.

Nat Commun. 2011 Jul 19;2:394. doi: 10.1038/ncomms1396.

PMID:
21772265

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