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Items: 1 to 20 of 69

1.

Evidence standards in experimental and inferential INSDC Third Party Annotation data.

Cochrane G, Bates K, Apweiler R, Tateno Y, Mashima J, Kosuge T, Mizrachi IK, Schafer S, Fetchko M.

OMICS. 2006 Summer;10(2):105-13.

PMID:
16901214
2.

Genomics. Genome project standards in a new era of sequencing.

Chain PS, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny D, Ali J, Birren B, Bruce DC, Buhay C, Cole JR, Ding Y, Dugan S, Field D, Garrity GM, Gibbs R, Graves T, Han CS, Harrison SH, Highlander S, Hugenholtz P, Khouri HM, Kodira CD, Kolker E, Kyrpides NC, Lang D, Lapidus A, Malfatti SA, Markowitz V, Metha T, Nelson KE, Parkhill J, Pitluck S, Qin X, Read TD, Schmutz J, Sozhamannan S, Sterk P, Strausberg RL, Sutton G, Thomson NR, Tiedje JM, Weinstock G, Wollam A; Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium, Detter JC.

Science. 2009 Oct 9;326(5950):236-7. doi: 10.1126/science.1180614. No abstract available.

3.

The International Nucleotide Sequence Database Collaboration.

Nakamura Y, Cochrane G, Karsch-Mizrachi I; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2013 Jan;41(Database issue):D21-4. doi: 10.1093/nar/gks1084. Epub 2012 Nov 24.

4.

The International Nucleotide Sequence Database Collaboration.

Cochrane G, Karsch-Mizrachi I, Takagi T; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2016 Jan 4;44(D1):D48-50. doi: 10.1093/nar/gkv1323. Epub 2015 Dec 10.

5.

DDBJ progress report: a new submission system for leading to a correct annotation.

Kosuge T, Mashima J, Kodama Y, Fujisawa T, Kaminuma E, Ogasawara O, Okubo K, Takagi T, Nakamura Y.

Nucleic Acids Res. 2014 Jan;42(Database issue):D44-9. doi: 10.1093/nar/gkt1066. Epub 2013 Nov 4.

6.

The International Nucleotide Sequence Database Collaboration.

Karsch-Mizrachi I, Nakamura Y, Cochrane G; International Nucleotide Sequence Database Collaboration.

Nucleic Acids Res. 2012 Jan;40(Database issue):D33-7. doi: 10.1093/nar/gkr1006. Epub 2011 Nov 12.

7.

The DNA Data Bank of Japan launches a new resource, the DDBJ Omics Archive of functional genomics experiments.

Kodama Y, Mashima J, Kaminuma E, Gojobori T, Ogasawara O, Takagi T, Okubo K, Nakamura Y.

Nucleic Acids Res. 2012 Jan;40(Database issue):D38-42. doi: 10.1093/nar/gkr994. Epub 2011 Nov 22.

8.

Requirements and standards for organelle genome databases.

Boore JL.

OMICS. 2006 Summer;10(2):119-26. Review.

PMID:
16901216
9.

Concept of sample in OMICS technology.

Morrison N, Cochrane G, Faruque N, Tatusova T, Tateno Y, Hancock D, Field D.

OMICS. 2006 Summer;10(2):127-37. Review.

PMID:
16901217
10.

More biology from the sequence.

Taylor MS.

Genome Biol. 2001;2(8):REPORTS4018. Epub 2001 Jul 31. No abstract available.

11.

The EMBL Nucleotide Sequence Database.

Kulikova T, Aldebert P, Althorpe N, Baker W, Bates K, Browne P, van den Broek A, Cochrane G, Duggan K, Eberhardt R, Faruque N, Garcia-Pastor M, Harte N, Kanz C, Leinonen R, Lin Q, Lombard V, Lopez R, Mancuso R, McHale M, Nardone F, Silventoinen V, Stoehr P, Stoesser G, Tuli MA, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D27-30.

12.

DDBJ in preparation for overview of research activities behind data submissions.

Okubo K, Sugawara H, Gojobori T, Tateno Y.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D6-9.

13.

RefSeq microbial genomes database: new representation and annotation strategy.

Tatusova T, Ciufo S, Fedorov B, O'Neill K, Tolstoy I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D553-9. doi: 10.1093/nar/gkt1274. Epub 2013 Dec 6. Erratum in: Nucleic Acids Res. 2015 Apr 20;43(7):3872.

14.

The importance of uniformity in reporting protein-function data.

Apweiler R, Cornish-Bowden A, Hofmeyr JH, Kettner C, Leyh TS, Schomburg D, Tipton K.

Trends Biochem Sci. 2005 Jan;30(1):11-2. No abstract available.

PMID:
15653320
15.

Genome Reviews: standardizing content and representation of information about complete genomes.

Sterk P, Kersey PJ, Apweiler R.

OMICS. 2006 Summer;10(2):114-8.

PMID:
16901215
16.

The EMBL Nucleotide Sequence Database.

Kanz C, Aldebert P, Althorpe N, Baker W, Baldwin A, Bates K, Browne P, van den Broek A, Castro M, Cochrane G, Duggan K, Eberhardt R, Faruque N, Gamble J, Diez FG, Harte N, Kulikova T, Lin Q, Lombard V, Lopez R, Mancuso R, McHale M, Nardone F, Silventoinen V, Sobhany S, Stoehr P, Tuli MA, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D29-33.

17.

An analysis of extensible modelling for functional genomics data.

Jones AR, Paton NW.

BMC Bioinformatics. 2005 Sep 27;6:235.

18.

EMBL Nucleotide Sequence Database: developments in 2005.

Cochrane G, Aldebert P, Althorpe N, Andersson M, Baker W, Baldwin A, Bates K, Bhattacharyya S, Browne P, van den Broek A, Castro M, Duggan K, Eberhardt R, Faruque N, Gamble J, Kanz C, Kulikova T, Lee C, Leinonen R, Lin Q, Lombard V, Lopez R, McHale M, McWilliam H, Mukherjee G, Nardone F, Pastor MP, Sobhany S, Stoehr P, Tzouvara K, Vaughan R, Wu D, Zhu W, Apweiler R.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D10-5.

19.

The annotation-enriched non-redundant patent sequence databases.

Li W, Kondratowicz B, McWilliam H, Nauche S, Lopez R.

Database (Oxford). 2013 Feb 9;2013:bat005. doi: 10.1093/database/bat005. Print 2013.

20.

A hitchhiker's guide to expressed sequence tag (EST) analysis.

Nagaraj SH, Gasser RB, Ranganathan S.

Brief Bioinform. 2007 Jan;8(1):6-21. Epub 2006 May 23. Review.

PMID:
16772268

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