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Items: 1 to 20 of 257

1.

BNTagger: improved tagging SNP selection using Bayesian networks.

Lee PH, Shatkay H.

Bioinformatics. 2006 Jul 15;22(14):e211-9.

PMID:
16873474
2.

Informative SNP selection methods based on SNP prediction.

He J, Zelikovsky A.

IEEE Trans Nanobioscience. 2007 Mar;6(1):60-7.

PMID:
17393851
3.

Choosing SNPs using feature selection.

Phuong TM, Lin Z, Altman RB.

J Bioinform Comput Biol. 2006 Apr;4(2):241-57.

PMID:
16819782
4.

Effective algorithms for tag SNP selection.

Liu TF, Sung WK, Li Y, Liu JJ, Mittal A, Mao PL.

J Bioinform Comput Biol. 2005 Oct;3(5):1089-106.

PMID:
16278949
5.

Accounting for genotyping errors in tagging SNP selection.

Liu W, Yang T, Zhao W, Chase GA.

Ann Hum Genet. 2007 Jul;71(Pt 4):467-79. Epub 2007 Mar 7.

6.

SEAN: SNP prediction and display program utilizing EST sequence clusters.

Huntley D, Baldo A, Johri S, Sergot M.

Bioinformatics. 2006 Feb 15;22(4):495-6. Epub 2005 Dec 15.

PMID:
16357032
7.

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.

PMID:
17646321
8.

Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.

Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, Dong S, Bartell D, Huang J, Chiles R, Yang G, Shen MM, Kulp D, Kennedy GC, Mei R, Jones KW, Cawley S.

Bioinformatics. 2005 May 1;21(9):1958-63. Epub 2005 Jan 18.

PMID:
15657097
9.

MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression.

He J, Zelikovsky A.

Bioinformatics. 2006 Oct 15;22(20):2558-61. Epub 2006 Aug 7.

PMID:
16895924
10.

Tag SNP selection in genotype data for maximizing SNP prediction accuracy.

Halperin E, Kimmel G, Shamir R.

Bioinformatics. 2005 Jun;21 Suppl 1:i195-203.

PMID:
15961458
11.

Dynamic variable selection in SNP genotype autocalling from APEX microarray data.

Podder M, Welch WJ, Zamar RH, Tebbutt SJ.

BMC Bioinformatics. 2006 Nov 30;7:521.

12.

Analysis of SNP-expression association matrices.

Tsalenko A, Sharan R, Kristensen V, Edvardsen H, Børresen-Dale AL, Ben-Dor A, Yakhini Z.

J Bioinform Comput Biol. 2006 Apr;4(2):259-74.

PMID:
16819783
13.

A comparison of tagging methods and their tagging space.

Ke X, Miretti MM, Broxholme J, Hunt S, Beck S, Bentley DR, Deloukas P, Cardon LR.

Hum Mol Genet. 2005 Sep 15;14(18):2757-67. Epub 2005 Aug 15.

PMID:
16103130
14.

Genome-wide selection of tag SNPs using multiple-marker correlation.

Hao K.

Bioinformatics. 2007 Dec 1;23(23):3178-84. Epub 2007 Nov 15.

PMID:
18006555
15.

Automated identification of single nucleotide polymorphisms from sequencing data.

Takahashi M, Matsuda F, Margetic N, Lathrop M.

J Bioinform Comput Biol. 2003 Jul;1(2):253-65.

PMID:
15290772
16.

Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

Quinlan AR, Stewart DA, Strömberg MP, Marth GT.

Nat Methods. 2008 Feb;5(2):179-81. doi: 10.1038/nmeth.1172. Epub 2008 Jan 13.

PMID:
18193056
17.

The impact of missing and erroneous genotypes on tagging SNP selection and power of subsequent association tests.

Liu W, Zhao W, Chase GA.

Hum Hered. 2006;61(1):31-44. Epub 2006 Mar 23.

PMID:
16557026
18.

Simulating association studies: a data-based resampling method for candidate regions or whole genome scans.

Wright FA, Huang H, Guan X, Gamiel K, Jeffries C, Barry WT, de Villena FP, Sullivan PF, Wilhelmsen KC, Zou F.

Bioinformatics. 2007 Oct 1;23(19):2581-8. Epub 2007 Sep 4.

PMID:
17785348
19.

A new method for SNP discovery.

Xu JY, Xu GB, Chen SL.

Biotechniques. 2009 Mar;46(3):201-8. doi: 10.2144/000113075.

20.

Inferring missing genotypes in large SNP panels using fast nearest-neighbor searches over sliding windows.

Roberts A, McMillan L, Wang W, Parker J, Rusyn I, Threadgill D.

Bioinformatics. 2007 Jul 1;23(13):i401-7.

PMID:
17646323

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