Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 65

1.

Dense subgraph computation via stochastic search: application to detect transcriptional modules.

Everett L, Wang LS, Hannenhalli S.

Bioinformatics. 2006 Jul 15;22(14):e117-23.

PMID:
16873461
2.

A graph-based approach to systematically reconstruct human transcriptional regulatory modules.

Yan X, Mehan MR, Huang Y, Waterman MS, Yu PS, Zhou XJ.

Bioinformatics. 2007 Jul 1;23(13):i577-86.

PMID:
17646346
3.
4.

MotifCut: regulatory motifs finding with maximum density subgraphs.

Fratkin E, Naughton BT, Brutlag DL, Batzoglou S.

Bioinformatics. 2006 Jul 15;22(14):e150-7.

PMID:
16873465
5.

Computational detection of cis -regulatory modules.

Aerts S, Van Loo P, Thijs G, Moreau Y, De Moor B.

Bioinformatics. 2003 Oct;19 Suppl 2:ii5-14.

PMID:
14534164
6.

Searching for statistically significant regulatory modules.

Bailey TL, Noble WS.

Bioinformatics. 2003 Oct;19 Suppl 2:ii16-25.

PMID:
14534166
7.

Sequence features of DNA binding sites reveal structural class of associated transcription factor.

Narlikar L, Hartemink AJ.

Bioinformatics. 2006 Jan 15;22(2):157-63. Epub 2005 Nov 2.

PMID:
16267080
8.
9.
10.

A pattern recognition approach to infer time-lagged genetic interactions.

Chuang CL, Jen CH, Chen CM, Shieh GS.

Bioinformatics. 2008 May 1;24(9):1183-90. doi: 10.1093/bioinformatics/btn098. Epub 2008 Mar 12.

PMID:
18337258
11.

dPattern: transcription factor binding site (TFBS) discovery in human genome using a discriminative pattern analysis.

Bae SH, Tang H, Wu J, Xie J, Kim S.

Bioinformatics. 2007 Oct 1;23(19):2619-21. Epub 2007 Jun 5.

PMID:
17550915
12.

Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites.

Dieterich C, Herwig R, Vingron M.

Bioinformatics. 2003 Oct;19 Suppl 2:ii50-6.

PMID:
14534171
13.

Signal propagation in nonlinear stochastic gene regulatory networks.

Achimescu S, Lipan O.

Syst Biol (Stevenage). 2006 May;153(3):120-34.

PMID:
16984086
14.

The combination approach of SVM and ECOC for powerful identification and classification of transcription factor.

Zheng G, Qian Z, Yang Q, Wei C, Xie L, Zhu Y, Li Y.

BMC Bioinformatics. 2008 Jun 16;9:282. doi: 10.1186/1471-2105-9-282.

15.

A specialized learner for inferring structured cis-regulatory modules.

Noto K, Craven M.

BMC Bioinformatics. 2006 Dec 5;7:528.

16.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

PMID:
17332025
17.

Combining pattern discovery and discriminant analysis to predict gene co-regulation.

Simonis N, Wodak SJ, Cohen GN, van Helden J.

Bioinformatics. 2004 Oct 12;20(15):2370-9. Epub 2004 Apr 8.

PMID:
15073004
18.

Detection of eQTL modules mediated by activity levels of transcription factors.

Sun W, Yu T, Li KC.

Bioinformatics. 2007 Sep 1;23(17):2290-7. Epub 2007 Jun 28.

PMID:
17599927
19.

Discovery of microRNA-mRNA modules via population-based probabilistic learning.

Joung JG, Hwang KB, Nam JW, Kim SJ, Zhang BT.

Bioinformatics. 2007 May 1;23(9):1141-7. Epub 2007 Mar 9.

PMID:
17350973
20.

Natural similarity measures between position frequency matrices with an application to clustering.

Pape UJ, Rahmann S, Vingron M.

Bioinformatics. 2008 Feb 1;24(3):350-7. doi: 10.1093/bioinformatics/btm610. Epub 2008 Jan 2.

PMID:
18174183

Supplemental Content

Support Center