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Items: 1 to 20 of 302


New directions in biomedical text annotation: definitions, guidelines and corpus construction.

Wilbur WJ, Rzhetsky A, Shatkay H.

BMC Bioinformatics. 2006 Jul 25;7:356.


Multi-dimensional classification of biomedical text: toward automated, practical provision of high-utility text to diverse users.

Shatkay H, Pan F, Rzhetsky A, Wilbur WJ.

Bioinformatics. 2008 Sep 15;24(18):2086-93. doi: 10.1093/bioinformatics/btn381. Epub 2008 Aug 20.


Construction of an annotated corpus to support biomedical information extraction.

Thompson P, Iqbal SA, McNaught J, Ananiadou S.

BMC Bioinformatics. 2009 Oct 23;10:349. doi: 10.1186/1471-2105-10-349.


NCBI disease corpus: a resource for disease name recognition and concept normalization.

Doğan RI, Leaman R, Lu Z.

J Biomed Inform. 2014 Feb;47:1-10. doi: 10.1016/j.jbi.2013.12.006. Epub 2014 Jan 3.


Concept annotation in the CRAFT corpus.

Bada M, Eckert M, Evans D, Garcia K, Shipley K, Sitnikov D, Baumgartner WA Jr, Cohen KB, Verspoor K, Blake JA, Hunter LE.

BMC Bioinformatics. 2012 Jul 9;13:161. doi: 10.1186/1471-2105-13-161.


Corpus annotation for mining biomedical events from literature.

Kim JD, Ohta T, Tsujii J.

BMC Bioinformatics. 2008 Jan 8;9:10. doi: 10.1186/1471-2105-9-10.


The BioScope corpus: biomedical texts annotated for uncertainty, negation and their scopes.

Vincze V, Szarvas G, Farkas R, Móra G, Csirik J.

BMC Bioinformatics. 2008 Nov 19;9 Suppl 11:S9. doi: 10.1186/1471-2105-9-S11-S9.


An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.


Syntactic parsing of clinical text: guideline and corpus development with handling ill-formed sentences.

Fan JW, Yang EW, Jiang M, Prasad R, Loomis RM, Zisook DS, Denny JC, Xu H, Huang Y.

J Am Med Inform Assoc. 2013 Nov-Dec;20(6):1168-77. doi: 10.1136/amiajnl-2013-001810. Epub 2013 Aug 1.


Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.


Automatically classifying sentences in full-text biomedical articles into Introduction, Methods, Results and Discussion.

Agarwal S, Yu H.

Bioinformatics. 2009 Dec 1;25(23):3174-80. doi: 10.1093/bioinformatics/btp548. Epub 2009 Sep 25.


Text mining and protein annotations: the construction and use of protein description sentences.

Krallinger M, Malik R, Valencia A.

Genome Inform. 2006;17(2):121-30.


A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC.

Kors JA, Clematide S, Akhondi SA, van Mulligen EM, Rebholz-Schuhmann D.

J Am Med Inform Assoc. 2015 Sep;22(5):948-56. doi: 10.1093/jamia/ocv037. Epub 2015 May 6.


BC4GO: a full-text corpus for the BioCreative IV GO task.

Van Auken K, Schaeffer ML, McQuilton P, Laulederkind SJ, Li D, Wang SJ, Hayman GT, Tweedie S, Arighi CN, Done J, Müller HM, Sternberg PW, Mao Y, Wei CH, Lu Z.

Database (Oxford). 2014 Jul 28;2014. pii: bau074. doi: 10.1093/database/bau074. Print 2014.


Mapping annotations with textual evidence using an scLDA model.

Jin B, Chen V, Chen L, Lu X.

AMIA Annu Symp Proc. 2011;2011:834-42. Epub 2011 Oct 22.


BioCreative V CDR task corpus: a resource for chemical disease relation extraction.

Li J, Sun Y, Johnson RJ, Sciaky D, Wei CH, Leaman R, Davis AP, Mattingly CJ, Wiegers TC, Lu Z.

Database (Oxford). 2016 May 9;2016. pii: baw068. doi: 10.1093/database/baw068. Print 2016.


Semi-automatic semantic annotation of PubMed queries: a study on quality, efficiency, satisfaction.

Névéol A, Islamaj Doğan R, Lu Z.

J Biomed Inform. 2011 Apr;44(2):310-8. doi: 10.1016/j.jbi.2010.11.001. Epub 2010 Nov 20.


BioInfer: a corpus for information extraction in the biomedical domain.

Pyysalo S, Ginter F, Heimonen J, Björne J, Boberg J, Järvinen J, Salakoski T.

BMC Bioinformatics. 2007 Feb 9;8:50.


Challenges for automatically extracting molecular interactions from full-text articles.

McIntosh T, Curran JR.

BMC Bioinformatics. 2009 Sep 24;10:311. doi: 10.1186/1471-2105-10-311.

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