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Items: 1 to 20 of 145

1.

Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays.

Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, Singer MA, Richmond TA, Dorschner MO, McArthur M, Hawrylycz M, Green RD, Navas PA, Noble WS, Stamatoyannopoulos JA.

Nat Methods. 2006 Jul;3(7):511-8.

PMID:
16791208
2.

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.

3.

High-throughput localization of functional elements by quantitative chromatin profiling.

Dorschner MO, Hawrylycz M, Humbert R, Wallace JC, Shafer A, Kawamoto J, Mack J, Hall R, Goldy J, Sabo PJ, Kohli A, Li Q, McArthur M, Stamatoyannopoulos JA.

Nat Methods. 2004 Dec;1(3):219-25. Epub 2004 Nov 18.

PMID:
15782197
4.

Discovery of functional noncoding elements by digital analysis of chromatin structure.

Sabo PJ, Hawrylycz M, Wallace JC, Humbert R, Yu M, Shafer A, Kawamoto J, Hall R, Mack J, Dorschner MO, McArthur M, Stamatoyannopoulos JA.

Proc Natl Acad Sci U S A. 2004 Nov 30;101(48):16837-42. Epub 2004 Nov 18.

5.

Genome-wide identification of DNaseI hypersensitive sites using active chromatin sequence libraries.

Sabo PJ, Humbert R, Hawrylycz M, Wallace JC, Dorschner MO, McArthur M, Stamatoyannopoulos JA.

Proc Natl Acad Sci U S A. 2004 Mar 30;101(13):4537-42. Epub 2004 Mar 19.

6.

DNase-chip: a high-resolution method to identify DNase I hypersensitive sites using tiled microarrays.

Crawford GE, Davis S, Scacheri PC, Renaud G, Halawi MJ, Erdos MR, Green R, Meltzer PS, Wolfsberg TG, Collins FS.

Nat Methods. 2006 Jul;3(7):503-9.

7.

Mapping and characterization of DNase I hypersensitive sites in Arabidopsis chromatin.

Kodama Y, Nagaya S, Shinmyo A, Kato K.

Plant Cell Physiol. 2007 Mar;48(3):459-70. Epub 2007 Feb 5.

PMID:
17283013
8.

Mapping DNase-I hypersensitive sites on human isochores.

Di Filippo M, Bernardi G.

Gene. 2008 Aug 1;419(1-2):62-5. doi: 10.1016/j.gene.2008.02.012. Epub 2008 Feb 21.

PMID:
18436395
9.

Mapping regulatory elements by DNaseI hypersensitivity chip (DNase-Chip).

Shibata Y, Crawford GE.

Methods Mol Biol. 2009;556:177-90. doi: 10.1007/978-1-60327-192-9_13.

PMID:
19488879
10.

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.

Hon G, Ren B, Wang W.

PLoS Comput Biol. 2008 Oct;4(10):e1000201. doi: 10.1371/journal.pcbi.1000201. Epub 2008 Oct 17.

11.

[Regulatory systems of genome domains with vague boundaries].

Iudinkova ES, Razin SV.

Genetika. 2003 Feb;39(2):182-6. Review. Russian.

PMID:
12669413
12.

Predicting the in vivo signature of human gene regulatory sequences.

Noble WS, Kuehn S, Thurman R, Yu M, Stamatoyannopoulos J.

Bioinformatics. 2005 Jun;21 Suppl 1:i338-43.

PMID:
15961476
13.

Measuring Arabidopsis chromatin accessibility using DNase I-polymerase chain reaction and DNase I-chip assays.

Shu H, Gruissem W, Hennig L.

Plant Physiol. 2013 Aug;162(4):1794-801. doi: 10.1104/pp.113.220400. Epub 2013 Jun 5.

14.

Dynamic chromatin: the regulatory domain organization of eukaryotic gene loci.

Bonifer C, Hecht A, Saueressig H, Winter DM, Sippel AE.

J Cell Biochem. 1991 Oct;47(2):99-108. Review.

PMID:
1757483
15.

Identifying gene regulatory elements by genome-wide recovery of DNase hypersensitive sites.

Crawford GE, Holt IE, Mullikin JC, Tai D, Blakesley R, Bouffard G, Young A, Masiello C, Green ED, Wolfsberg TG, Collins FS; National Institutes Of Health Intramural Sequencing Center.

Proc Natl Acad Sci U S A. 2004 Jan 27;101(4):992-7. Epub 2004 Jan 19.

16.

Applications of DNA tiling arrays to experimental genome annotation and regulatory pathway discovery.

Bertone P, Gerstein M, Snyder M.

Chromosome Res. 2005;13(3):259-74. Review.

PMID:
15868420
17.

A whole genome analysis of 5' regulatory regions of human genes for putative cis-acting modulators of nucleosome positioning.

Ganapathi M, Singh GP, Sandhu KS, Brahmachari SK, Brahmachari V.

Gene. 2007 Apr 15;391(1-2):242-51. Epub 2007 Jan 26.

PMID:
17321698
18.

Mapping of genetic and epigenetic regulatory networks using microarrays.

van Steensel B.

Nat Genet. 2005 Jun;37 Suppl:S18-24. Review.

PMID:
15920525
19.

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS).

Crawford GE, Holt IE, Whittle J, Webb BD, Tai D, Davis S, Margulies EH, Chen Y, Bernat JA, Ginsburg D, Zhou D, Luo S, Vasicek TJ, Daly MJ, Wolfsberg TG, Collins FS.

Genome Res. 2006 Jan;16(1):123-31. Epub 2005 Dec 12.

20.

Utilizing tiling microarrays for whole-genome analysis in plants.

Gregory BD, Yazaki J, Ecker JR.

Plant J. 2008 Feb;53(4):636-44. doi: 10.1111/j.1365-313X.2007.03320.x. Review.

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