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Items: 1 to 20 of 100

1.

A quality assessment survey of SNP genotyping laboratories.

Lahermo P, Liljedahl U, Alnaes G, Axelsson T, Brookes AJ, Ellonen P, Groop PH, Halldén C, Holmberg D, Holmberg K, Keinänen M, Kepp K, Kere J, Kiviluoma P, Kristensen V, Lindgren C, Odeberg J, Osterman P, Parkkonen M, Saarela J, Sterner M, Strömqvist L, Talas U, Wessman M, Palotie A, Syvänen AC.

Hum Mutat. 2006 Jul;27(7):711-4.

PMID:
16786507
2.

Simple SNP-based minimal marker genotyping for Humulus lupulus L. identification and variety validation.

Henning JA, Coggins J, Peterson M.

BMC Res Notes. 2015 Oct 6;8:542. doi: 10.1186/s13104-015-1492-2.

3.

European external quality control study on the competence of laboratories to recognize rare sequence variants resulting in unusual genotyping results.

Márki-Zay J, Klein CL, Gancberg D, Schimmel HG, Dux L.

Clin Chem. 2009 Apr;55(4):739-47. doi: 10.1373/clinchem.2008.112102. Epub 2009 Feb 20.

4.
5.

High concordance of bovine single nucleotide polymorphism genotypes generated using two independent genotyping strategies.

Magee DA, Berkowicz EW, Sikora KM, Sweeney T, Kenny DA, Kelly AK, Evans RD, Wickham BW, Bradley DG, Spillane C, MacHugh DE.

Anim Biotechnol. 2010 Oct;21(4):257-62. doi: 10.1080/10495398.2010.509680.

PMID:
20967645
6.

Automatic scoring and quality assessment using accuracy bounds for FP-TDI SNP genotyping data.

Kschischo M, Kern R, Gieger C, Steinhauser M, Tolle R.

Appl Bioinformatics. 2005;4(2):75-84.

PMID:
16128609
7.

External quality assessment for human papillomavirus 16/18 DNA detection and genotyping in Shanghai, China.

Wang X, Liu F, Jiang L, Bao Y, Xiao Y, Wang H.

Clin Chem Lab Med. 2017 Feb 1;55(2):195-202. doi: 10.1515/cclm-2016-0293.

PMID:
27816947
8.

Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings.

Roux PF, Marthey S, Djari A, Moroldo M, Esquerré D, Estellé J, Klopp C, Lagarrigue S, Demeure O.

Anim Genet. 2015 Feb;46(1):82-6. doi: 10.1111/age.12248. Epub 2014 Dec 16.

PMID:
25515399
9.

Temperature switch PCR (TSP): Robust assay design for reliable amplification and genotyping of SNPs.

Tabone T, Mather DE, Hayden MJ.

BMC Genomics. 2009 Dec 3;10:580. doi: 10.1186/1471-2164-10-580.

10.

Evaluation of the editing process in human immunodeficiency virus type 1 genotyping.

Huang DD, Eshleman SH, Brambilla DJ, Palumbo PE, Bremer JW.

J Clin Microbiol. 2003 Jul;41(7):3265-72.

11.

Effects of DNA mass on multiple displacement whole genome amplification and genotyping performance.

Bergen AW, Qi Y, Haque KA, Welch RA, Chanock SJ.

BMC Biotechnol. 2005 Sep 16;5:24.

12.

Silhouette scores for assessment of SNP genotype clusters.

Lovmar L, Ahlford A, Jonsson M, Syvänen AC.

BMC Genomics. 2005 Mar 10;6:35.

13.

Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies.

Torkamaneh D, Laroche J, Belzile F.

PLoS One. 2016 Aug 22;11(8):e0161333. doi: 10.1371/journal.pone.0161333. eCollection 2016.

14.

An improved genotyping by sequencing (GBS) approach offering increased versatility and efficiency of SNP discovery and genotyping.

Sonah H, Bastien M, Iquira E, Tardivel A, Légaré G, Boyle B, Normandeau É, Laroche J, Larose S, Jean M, Belzile F.

PLoS One. 2013;8(1):e54603. doi: 10.1371/journal.pone.0054603. Epub 2013 Jan 23.

15.
16.

Dynamic model based algorithms for screening and genotyping over 100 K SNPs on oligonucleotide microarrays.

Di X, Matsuzaki H, Webster TA, Hubbell E, Liu G, Dong S, Bartell D, Huang J, Chiles R, Yang G, Shen MM, Kulp D, Kennedy GC, Mei R, Jones KW, Cawley S.

Bioinformatics. 2005 May 1;21(9):1958-63. Epub 2005 Jan 18.

PMID:
15657097
17.

SNPstream UHT: ultra-high throughput SNP genotyping for pharmacogenomics and drug discovery.

Bell PA, Chaturvedi S, Gelfand CA, Huang CY, Kochersperger M, Kopla R, Modica F, Pohl M, Varde S, Zhao R, Zhao X, Boyce-Jacino MT, Yassen A.

Biotechniques. 2002 Jun;Suppl:70-2, 74, 76-7. Erratum in: Biotechniques. 2003 Mar;34(3):496.

PMID:
12083401
18.

Comparison among three variant callers and assessment of the accuracy of imputation from SNP array data to whole-genome sequence level in chicken.

Ni G, Strom TM, Pausch H, Reimer C, Preisinger R, Simianer H, Erbe M.

BMC Genomics. 2015 Oct 21;16:824. doi: 10.1186/s12864-015-2059-2.

19.

Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data.

Torkamaneh D, Laroche J, Bastien M, Abed A, Belzile F.

BMC Bioinformatics. 2017 Jan 3;18(1):5. doi: 10.1186/s12859-016-1431-9.

20.

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

Xiao Y, Segal MR, Yang YH, Yeh RF.

Bioinformatics. 2007 Jun 15;23(12):1459-67. Epub 2007 Apr 25.

PMID:
17459966

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