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Items: 1 to 20 of 54

1.

Integrated gene expression profiling and linkage analysis in the rat.

Petretto E, Mangion J, Pravanec M, Hubner N, Aitman TJ.

Mamm Genome. 2006 Jun;17(6):480-9. Epub 2006 Jun 12. Review.

PMID:
16783629
2.

Genome-wide co-expression analysis in multiple tissues.

Grieve IC, Dickens NJ, Pravenec M, Kren V, Hubner N, Cook SA, Aitman TJ, Petretto E, Mangion J.

PLoS One. 2008;3(12):e4033. doi: 10.1371/journal.pone.0004033. Epub 2008 Dec 29.

3.

Heritability and tissue specificity of expression quantitative trait loci.

Petretto E, Mangion J, Dickens NJ, Cook SA, Kumaran MK, Lu H, Fischer J, Maatz H, Kren V, Pravenec M, Hubner N, Aitman TJ.

PLoS Genet. 2006 Oct 20;2(10):e172. Epub 2006 Aug 28.

4.

Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease.

Hubner N, Wallace CA, Zimdahl H, Petretto E, Schulz H, Maciver F, Mueller M, Hummel O, Monti J, Zidek V, Musilova A, Kren V, Causton H, Game L, Born G, Schmidt S, Müller A, Cook SA, Kurtz TW, Whittaker J, Pravenec M, Aitman TJ.

Nat Genet. 2005 Mar;37(3):243-53. Epub 2005 Feb 13.

PMID:
15711544
5.

Genetic analysis of genome-wide variation in human gene expression.

Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS, Cheung VG.

Nature. 2004 Aug 12;430(7001):743-7. Epub 2004 Jul 21.

6.

Large-scale East-Asian eQTL mapping reveals novel candidate genes for LD mapping and the genomic landscape of transcriptional effects of sequence variants.

Narahara M, Higasa K, Nakamura S, Tabara Y, Kawaguchi T, Ishii M, Matsubara K, Matsuda F, Yamada R.

PLoS One. 2014 Jun 23;9(6):e100924. doi: 10.1371/journal.pone.0100924. eCollection 2014.

7.

Sex specific gene regulation and expression QTLs in mouse macrophages from a strain intercross.

Bhasin JM, Chakrabarti E, Peng DQ, Kulkarni A, Chen X, Smith JD.

PLoS One. 2008 Jan 16;3(1):e1435. doi: 10.1371/journal.pone.0001435.

8.

Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.

GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE.

BMC Genomics. 2006 Sep 15;7:235.

9.

Combining genetic mapping with genome-wide expression in experimental autoimmune encephalomyelitis highlights a gene network enriched for T cell functions and candidate genes regulating autoimmunity.

Thessen Hedreul M, Möller S, Stridh P, Gupta Y, Gillett A, Daniel Beyeen A, Öckinger J, Flytzani S, Diez M, Olsson T, Jagodic M.

Hum Mol Genet. 2013 Dec 15;22(24):4952-66. doi: 10.1093/hmg/ddt343. Epub 2013 Jul 29.

10.

Expression quantitative trait loci analysis in plants.

Druka A, Potokina E, Luo Z, Jiang N, Chen X, Kearsey M, Waugh R.

Plant Biotechnol J. 2010 Jan;8(1):10-27. doi: 10.1111/j.1467-7652.2009.00460.x. Review.

11.

Mapping transcription mechanisms from multimodal genomic data.

Chang HH, McGeachie M, Alterovitz G, Ramoni MF.

BMC Bioinformatics. 2010 Oct 28;11 Suppl 9:S2. doi: 10.1186/1471-2105-11-S9-S2.

12.

Mediation analysis demonstrates that trans-eQTLs are often explained by cis-mediation: a genome-wide analysis among 1,800 South Asians.

Pierce BL, Tong L, Chen LS, Rahaman R, Argos M, Jasmine F, Roy S, Paul-Brutus R, Westra HJ, Franke L, Esko T, Zaman R, Islam T, Rahman M, Baron JA, Kibriya MG, Ahsan H.

PLoS Genet. 2014 Dec 4;10(12):e1004818. doi: 10.1371/journal.pgen.1004818. eCollection 2014 Dec.

13.

A block mixture model to map eQTLs for gene clustering and networking.

Wang N, Gosik K, Li R, Lindsay B, Wu R.

Sci Rep. 2016 Feb 19;6:21193. doi: 10.1038/srep21193.

14.

Network-based multiple locus linkage analysis of expression traits.

Pan W.

Bioinformatics. 2009 Jun 1;25(11):1390-6. doi: 10.1093/bioinformatics/btp177. Epub 2009 Mar 31.

15.

New insights into the genetic control of gene expression using a Bayesian multi-tissue approach.

Petretto E, Bottolo L, Langley SR, Heinig M, McDermott-Roe C, Sarwar R, Pravenec M, Hübner N, Aitman TJ, Cook SA, Richardson S.

PLoS Comput Biol. 2010 Apr 8;6(4):e1000737. doi: 10.1371/journal.pcbi.1000737.

16.

Expression QTL and regulatory network analysis of microtubule-associated protein tau gene.

Shen Q, Wang X, Chen Y, Xu L, Wang X, Lu L.

Parkinsonism Relat Disord. 2009 Aug;15(7):525-31. doi: 10.1016/j.parkreldis.2008.10.010. Epub 2009 Feb 23.

PMID:
19233709
17.
18.

Expression quantitative trait loci analysis of genes in porcine muscle by quantitative real-time RT-PCR compared to microarray data.

Ponsuksili S, Murani E, Phatsara C, Schwerin M, Schellander K, Wimmers K.

Heredity (Edinb). 2010 Sep;105(3):309-17. doi: 10.1038/hdy.2010.5. Epub 2010 Feb 10.

19.
20.

Sequence polymorphisms cause many false cis eQTLs.

Alberts R, Terpstra P, Li Y, Breitling R, Nap JP, Jansen RC.

PLoS One. 2007 Jul 18;2(7):e622.

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