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Items: 1 to 20 of 146

1.

A new measure for functional similarity of gene products based on Gene Ontology.

Schlicker A, Domingues FS, Rahnenführer J, Lengauer T.

BMC Bioinformatics. 2006 Jun 15;7:302.

2.

A relation based measure of semantic similarity for Gene Ontology annotations.

Sheehan B, Quigley A, Gaudin B, Dobson S.

BMC Bioinformatics. 2008 Nov 4;9:468. doi: 10.1186/1471-2105-9-468.

3.
4.

Combining evidence, biomedical literature and statistical dependence: new insights for functional annotation of gene sets.

Aubry M, Monnier A, Chicault C, de Tayrac M, Galibert MD, Burgun A, Mosser J.

BMC Bioinformatics. 2006 May 4;7:241.

5.

Combining hierarchical and associative gene ontology relations with textual evidence in estimating gene and gene product similarity.

Sanfilippo A, Posse C, Gopalan B, Riensche R, Beagley N, Baddeley B, Tratz S, Gregory M.

IEEE Trans Nanobioscience. 2007 Mar;6(1):51-9.

PMID:
17393850
6.
7.

Discovering gene annotations in biomedical text databases.

Cakmak A, Ozsoyoglu G.

BMC Bioinformatics. 2008 Mar 6;9:143. doi: 10.1186/1471-2105-9-143.

8.

GOChase: correcting errors from Gene Ontology-based annotations for gene products.

Park YR, Park CH, Kim JH.

Bioinformatics. 2005 Mar;21(6):829-31. Epub 2004 Oct 28.

PMID:
15513987
9.

A transversal approach to predict gene product networks from ontology-based similarity.

Chabalier J, Mosser J, Burgun A.

BMC Bioinformatics. 2007 Jul 2;8:235.

10.

Get ready to GO! A biologist's guide to the Gene Ontology.

Lomax J.

Brief Bioinform. 2005 Sep;6(3):298-304. Review.

PMID:
16212777
11.

Comparative analysis of gene sets in the Gene Ontology space under the multiple hypothesis testing framework.

Zhong S, Tian L, Li C, Storch KF, Wong WH.

Proc IEEE Comput Syst Bioinform Conf. 2004:425-35.

PMID:
16448035
12.
13.

Metrics for GO based protein semantic similarity: a systematic evaluation.

Pesquita C, Faria D, Bastos H, Ferreira AE, Falcão AO, Couto FM.

BMC Bioinformatics. 2008 Apr 29;9 Suppl 5:S4. doi: 10.1186/1471-2105-9-S5-S4.

14.
15.

Gene Ontology friendly biclustering of expression profiles.

Liu J, Wang W, Yang J.

Proc IEEE Comput Syst Bioinform Conf. 2004:436-47.

PMID:
16448036
16.

Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.

Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J.

BMC Bioinformatics. 2015 Feb 14;16:44. doi: 10.1186/s12859-015-0474-7.

17.

Automatic extension of Gene Ontology with flexible identification of candidate terms.

Lee JB, Kim JJ, Park JC.

Bioinformatics. 2006 Mar 15;22(6):665-70. Epub 2006 Jan 21.

PMID:
16428805
18.

IntelliGO: a new vector-based semantic similarity measure including annotation origin.

Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD.

BMC Bioinformatics. 2010 Dec 1;11:588. doi: 10.1186/1471-2105-11-588.

19.

Gene Ontology term overlap as a measure of gene functional similarity.

Mistry M, Pavlidis P.

BMC Bioinformatics. 2008 Aug 4;9:327. doi: 10.1186/1471-2105-9-327.

20.

A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences.

Othman RM, Deris S, Illias RM.

J Biomed Inform. 2008 Feb;41(1):65-81. Epub 2007 Jun 27.

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