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Items: 1 to 20 of 146

1.

Comprehensive analysis of combinatorial regulation using the transcriptional regulatory network of yeast.

Balaji S, Babu MM, Iyer LM, Luscombe NM, Aravind L.

J Mol Biol. 2006 Jun 30;360(1):213-27. Epub 2006 May 3.

PMID:
16762362
2.

Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks.

Balaji S, Iyer LM, Aravind L, Babu MM.

J Mol Biol. 2006 Jun 30;360(1):204-12. Epub 2006 Apr 27.

PMID:
16730024
3.

Transcriptional regulatory network shapes the genome structure of Saccharomyces cerevisiae.

Li S, Heermann DW.

Nucleus. 2013 May-Jun;4(3):216-28. doi: 10.4161/nucl.24875. Epub 2013 May 1.

4.

A simple model of the modular structure of transcriptional regulation in yeast.

Filkov V, Shah N.

J Comput Biol. 2008 May;15(4):393-405. doi: 10.1089/cmb.2008.0020.

PMID:
18466069
6.

Transcriptional regulatory networks in Saccharomyces cerevisiae.

Lee TI, Rinaldi NJ, Robert F, Odom DT, Bar-Joseph Z, Gerber GK, Hannett NM, Harbison CT, Thompson CM, Simon I, Zeitlinger J, Jennings EG, Murray HL, Gordon DB, Ren B, Wyrick JJ, Tagne JB, Volkert TL, Fraenkel E, Gifford DK, Young RA.

Science. 2002 Oct 25;298(5594):799-804.

7.

Stratus not altocumulus: a new view of the yeast protein interaction network.

Batada NN, Reguly T, Breitkreutz A, Boucher L, Breitkreutz BJ, Hurst LD, Tyers M.

PLoS Biol. 2006 Oct;4(10):e317.

8.

Computational architecture of the yeast regulatory network.

Maslov S, Sneppen K.

Phys Biol. 2005 Nov 9;2(4):S94-100.

PMID:
16280626
9.

Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.

10.

Comparative analysis of regulatory transcription factors in Schizosaccharomyces pombe and budding yeasts.

Beskow A, Wright AP.

Yeast. 2006 Oct 15;23(13):929-35. Erratum in: Yeast. 2006 Dec;23(16):1173.

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13.

Systems-level evidence of transcriptional co-regulation of yeast protein complexes.

Lee JW, Zemojtel T, Shakhnovich E.

J Comput Biol. 2009 Feb;16(2):331-9. doi: 10.1089/cmb.2008.17TT.

PMID:
19193150
14.

Revealing modular organization in the yeast transcriptional network.

Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, Barkai N.

Nat Genet. 2002 Aug;31(4):370-7. Epub 2002 Jul 22.

PMID:
12134151
15.

Using targeted chromatin regulators to engineer combinatorial and spatial transcriptional regulation.

Keung AJ, Bashor CJ, Kiriakov S, Collins JJ, Khalil AS.

Cell. 2014 Jul 3;158(1):110-20. doi: 10.1016/j.cell.2014.04.047.

16.

Genomic dissection of the cell-type-specification circuit in Saccharomyces cerevisiae.

Galgoczy DJ, Cassidy-Stone A, Llinás M, O'Rourke SM, Herskowitz I, DeRisi JL, Johnson AD.

Proc Natl Acad Sci U S A. 2004 Dec 28;101(52):18069-74. Epub 2004 Dec 16.

17.

Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach.

Bailly-Bechet M, Braunstein A, Pagnani A, Weigt M, Zecchina R.

BMC Bioinformatics. 2010 Jun 29;11:355. doi: 10.1186/1471-2105-11-355.

18.

Genomic analysis of regulatory network dynamics reveals large topological changes.

Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M.

Nature. 2004 Sep 16;431(7006):308-12.

19.

Evolutionary rates and centrality in the yeast gene regulatory network.

Jovelin R, Phillips PC.

Genome Biol. 2009;10(4):R35. doi: 10.1186/gb-2009-10-4-r35. Epub 2009 Apr 9.

20.

The PathoYeastract database: an information system for the analysis of gene and genomic transcription regulation in pathogenic yeasts.

Monteiro PT, Pais P, Costa C, Manna S, Sá-Correia I, Teixeira MC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D597-D603. doi: 10.1093/nar/gkw817. Epub 2016 Sep 12.

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