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Items: 1 to 20 of 101

1.

Residues crucial for maintaining short paths in network communication mediate signaling in proteins.

del Sol A, Fujihashi H, Amoros D, Nussinov R.

Mol Syst Biol. 2006;2:2006.0019. Epub 2006 May 2.

2.

Evolutionarily conserved networks of residues mediate allosteric communication in proteins.

Süel GM, Lockless SW, Wall MA, Ranganathan R.

Nat Struct Biol. 2003 Jan;10(1):59-69. Erratum in: Nat Struct Biol. 2003 Mar;10(3):232.

PMID:
12483203
3.
5.

A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence.

Baussand J, Carbone A.

PLoS Comput Biol. 2009 Sep;5(9):e1000488. doi: 10.1371/journal.pcbi.1000488. Epub 2009 Sep 4.

6.
7.

MCPath: Monte Carlo path generation approach to predict likely allosteric pathways and functional residues.

Kaya C, Armutlulu A, Ekesan S, Haliloglu T.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W249-55. doi: 10.1093/nar/gkt284. Epub 2013 Jun 5.

8.

Evolutionarily conserved pathways of energetic connectivity in protein families.

Lockless SW, Ranganathan R.

Science. 1999 Oct 8;286(5438):295-9.

9.

Dimerization and ligand binding affect the structure network of A(2A) adenosine receptor.

Fanelli F, Felline A.

Biochim Biophys Acta. 2011 May;1808(5):1256-66. doi: 10.1016/j.bbamem.2010.08.006. Epub 2010 Aug 14. Review.

10.

Interaction energy based protein structure networks.

Vijayabaskar MS, Vishveshwara S.

Biophys J. 2010 Dec 1;99(11):3704-15. doi: 10.1016/j.bpj.2010.08.079.

11.

Identifying folding nucleus based on residue contact networks of proteins.

Li J, Wang J, Wang W.

Proteins. 2008 Jun;71(4):1899-907. doi: 10.1002/prot.21891.

PMID:
18175318
12.

Analysis of the residue-residue coevolution network and the functionally important residues in proteins.

Lee BC, Park K, Kim D.

Proteins. 2008 Aug 15;72(3):863-72. doi: 10.1002/prot.21972.

PMID:
18275083
13.

Small-world communication of residues and significance for protein dynamics.

Atilgan AR, Akan P, Baysal C.

Biophys J. 2004 Jan;86(1 Pt 1):85-91.

14.

Evolution of allosteric control in glycogen phosphorylase.

Hudson JW, Golding GB, Crerar MM.

J Mol Biol. 1993 Dec 5;234(3):700-21.

PMID:
8254668
15.

Multiple contact network is a key determinant to protein folding rates.

Gromiha MM.

J Chem Inf Model. 2009 Apr;49(4):1130-5. doi: 10.1021/ci800440x.

PMID:
19338373
17.

Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication.

Atilgan AR, Turgut D, Atilgan C.

Biophys J. 2007 May 1;92(9):3052-62. Epub 2007 Feb 9.

18.

Residue centrality in alpha helical polytopic transmembrane protein structures.

Arnold Emerson I, Gothandam KM.

J Theor Biol. 2012 Sep 21;309:78-87. doi: 10.1016/j.jtbi.2012.06.002. Epub 2012 Jun 18.

PMID:
22721996
19.

Residue centrality, functionally important residues, and active site shape: analysis of enzyme and non-enzyme families.

del Sol A, Fujihashi H, Amoros D, Nussinov R.

Protein Sci. 2006 Sep;15(9):2120-8. Epub 2006 Aug 1.

20.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

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