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Items: 1 to 20 of 139

1.

Annotation of unknown yeast ORFs by correlation analysis of microarray data and extensive literature searches.

Pir P, Ulgen KO, Hayes A, Ilsen Onsan Z, Kirdar B, Oliver SG.

Yeast. 2006 May;23(7):553-71.

2.

Integration of gene expression data into genome-scale metabolic models.

Akesson M, Förster J, Nielsen J.

Metab Eng. 2004 Oct;6(4):285-93.

PMID:
15491858
3.
4.

Total number of coding open reading frames in the yeast genome.

Kowalczuk M, Mackiewicz P, Gierlik A, Dudek MR, Cebrat S.

Yeast. 1999 Aug;15(11):1031-4.

5.

Relationship between G+C content, ORF-length and mRNA concentration in Saccharomyces cerevisiae.

Marín A, Gallardo M, Kato Y, Shirahige K, Gutiérrez G, Ohta K, Aguilera A.

Yeast. 2003 Jun;20(8):703-11.

6.

A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution.

Harrison P, Kumar A, Lan N, Echols N, Snyder M, Gerstein M.

J Mol Biol. 2002 Feb 22;316(3):409-19.

PMID:
11866506
7.

Parallel and comparative analysis of the proteome and transcriptome of sorbic acid-stressed Saccharomyces cerevisiae.

de Nobel H, Lawrie L, Brul S, Klis F, Davis M, Alloush H, Coote P.

Yeast. 2001 Nov;18(15):1413-28.

8.

An integrated approach for finding overlooked genes in yeast.

Kumar A, Harrison PM, Cheung KH, Lan N, Echols N, Bertone P, Miller P, Gerstein MB, Snyder M.

Nat Biotechnol. 2002 Jan;20(1):58-63.

PMID:
11753363
9.

Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.

Ray SS, Bandyopadhyay S, Pal SK.

IEEE Trans Biomed Eng. 2009 Feb;56(2):229-36. doi: 10.1109/TBME.2008.2005955. Epub 2008 Sep 30.

PMID:
19272921
10.

High-density yeast-tiling array reveals previously undiscovered introns and extensive regulation of meiotic splicing.

Juneau K, Palm C, Miranda M, Davis RW.

Proc Natl Acad Sci U S A. 2007 Jan 30;104(5):1522-7. Epub 2007 Jan 23.

11.

A genomic study of the inter-ORF distances in Saccharomyces cerevisiae.

Pelechano V, García-Martínez J, Pérez-Ortín JE.

Yeast. 2006 Jul 15;23(9):689-99.

12.

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.

Winzeler EA, Shoemaker DD, Astromoff A, Liang H, Anderson K, Andre B, Bangham R, Benito R, Boeke JD, Bussey H, Chu AM, Connelly C, Davis K, Dietrich F, Dow SW, El Bakkoury M, Foury F, Friend SH, Gentalen E, Giaever G, Hegemann JH, Jones T, Laub M, Liao H, Liebundguth N, Lockhart DJ, Lucau-Danila A, Lussier M, M'Rabet N, Menard P, Mittmann M, Pai C, Rebischung C, Revuelta JL, Riles L, Roberts CJ, Ross-MacDonald P, Scherens B, Snyder M, Sookhai-Mahadeo S, Storms RK, Véronneau S, Voet M, Volckaert G, Ward TR, Wysocki R, Yen GS, Yu K, Zimmermann K, Philippsen P, Johnston M, Davis RW.

Science. 1999 Aug 6;285(5429):901-6.

13.

Wrestling with pleiotropy: genomic and topological analysis of the yeast gene expression network.

Featherstone DE, Broadie K.

Bioessays. 2002 Mar;24(3):267-74.

PMID:
11891763
14.

Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters.

Wu LF, Hughes TR, Davierwala AP, Robinson MD, Stoughton R, Altschuler SJ.

Nat Genet. 2002 Jul;31(3):255-65. Epub 2002 Jun 24.

PMID:
12089522
15.

Identification of putative regulatory upstream ORFs in the yeast genome using heuristics and evolutionary conservation.

Cvijović M, Dalevi D, Bilsland E, Kemp GJ, Sunnerhagen P.

BMC Bioinformatics. 2007 Aug 8;8:295.

16.
18.

Genomic expression pattern in Saccharomyces cerevisiae cells in response to high hydrostatic pressure.

Fernandes PM, Domitrovic T, Kao CM, Kurtenbach E.

FEBS Lett. 2004 Jan 2;556(1-3):153-60.

19.

Genome-wide monitoring of wine yeast gene expression during alcoholic fermentation.

Rossignol T, Dulau L, Julien A, Blondin B.

Yeast. 2003 Dec;20(16):1369-85.

20.

Characterization of 16 novel human genes showing high similarity to yeast sequences.

Stanchi F, Bertocco E, Toppo S, Dioguardi R, Simionati B, Cannata N, Zimbello R, Lanfranchi G, Valle G.

Yeast. 2001 Jan 15;18(1):69-80.

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