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Items: 1 to 20 of 156

1.

A periodic pattern of mRNA secondary structure created by the genetic code.

Shabalina SA, Ogurtsov AY, Spiridonov NA.

Nucleic Acids Res. 2006 May 8;34(8):2428-37. Print 2006.

2.

Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals.

Shabalina SA, Ogurtsov AY, Rogozin IB, Koonin EV, Lipman DJ.

Nucleic Acids Res. 2004 Mar 18;32(5):1774-82. Print 2004.

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Efficient translation initiation dictates codon usage at gene start.

Bentele K, Saffert P, Rauscher R, Ignatova Z, Blüthgen N.

Mol Syst Biol. 2013 Jun 18;9:675. doi: 10.1038/msb.2013.32.

6.

Selection on codon bias in yeast: a transcriptional hypothesis.

Trotta E.

Nucleic Acids Res. 2013 Nov;41(20):9382-95. doi: 10.1093/nar/gkt740. Epub 2013 Aug 13.

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9.

Post-termination ribosome interactions with the 5'UTR modulate yeast mRNA stability.

Vilela C, Ramirez CV, Linz B, Rodrigues-Pousada C, McCarthy JE.

EMBO J. 1999 Jun 1;18(11):3139-52.

10.

The requirement for eukaryotic initiation factor 4A (elF4A) in translation is in direct proportion to the degree of mRNA 5' secondary structure.

Svitkin YV, Pause A, Haghighat A, Pyronnet S, Witherell G, Belsham GJ, Sonenberg N.

RNA. 2001 Mar;7(3):382-94.

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12.

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

Ding Y, Tang Y, Kwok CK, Zhang Y, Bevilacqua PC, Assmann SM.

Nature. 2014 Jan 30;505(7485):696-700. doi: 10.1038/nature12756. Epub 2013 Nov 24.

PMID:
24270811
13.

Exposing synonymous mutations.

Hunt RC, Simhadri VL, Iandoli M, Sauna ZE, Kimchi-Sarfaty C.

Trends Genet. 2014 Jul;30(7):308-21. doi: 10.1016/j.tig.2014.04.006. Epub 2014 Jun 19. Review.

PMID:
24954581
14.

Translational control of apolipoprotein B mRNA: regulation via cis elements in the 5' and 3' untranslated regions.

Pontrelli L, Sidiropoulos KG, Adeli K.

Biochemistry. 2004 Jun 1;43(21):6734-44.

PMID:
15157107
16.

Translation attenuation via 3' terminal codon usage in bovine csn1s2 is responsible for the difference in αs2- and β-casein profile in milk.

Kim JJ, Yu J, Bag J, Bakovic M, Cant JP.

RNA Biol. 2015;12(3):354-67. doi: 10.1080/15476286.2015.1017231.

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Identification of secondary structure in the 5'-untranslated region of the human adrenomedullin mRNA with implications for the regulation of mRNA translation.

Brenet F, Dussault N, Delfino C, Boudouresque F, Chinot O, Martin PM, Ouafik LH.

Oncogene. 2006 Oct 19;25(49):6510-9. Epub 2006 May 22.

PMID:
16715138
20.

Directed evolution study unveiling key sequence factors that affect translation efficiency in Escherichia coli.

Tsukuda M, Miyazaki K.

J Biosci Bioeng. 2013 Nov;116(5):540-5. doi: 10.1016/j.jbiosc.2013.05.013. Epub 2013 Jun 18.

PMID:
23790548

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