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Items: 1 to 20 of 43

1.

The independence of our genome assemblies.

Adams MD, Sutton GG, Smith HO, Myers EW, Venter JC.

Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3025-6. No abstract available.

2.

Assembly reconciliation.

Zimin AV, Smith DR, Sutton G, Yorke JA.

Bioinformatics. 2008 Jan 1;24(1):42-5. Epub 2007 Dec 5.

PMID:
18057021
3.

Comparative analysis of human genome assemblies reveals genome-level differences.

Li S, Liao J, Cutler G, Hoey T, Hogenesch JB, Cooke MP, Schultz PG, Ling XB.

Genomics. 2002 Aug;80(2):138-9.

PMID:
12160725
4.

Patterns of tandem repetition in plant whole genome assemblies.

Navajas-Pérez R, Paterson AH.

Mol Genet Genomics. 2009 Jun;281(6):579-90. doi: 10.1007/s00438-009-0433-y. Epub 2009 Feb 26.

PMID:
19242726
5.

Management and visualization of whole genome shotgun assemblies using SAM.

Warren RL, Butterfield YS, Morin RD, Siddiqui AS, Marra MA, Jones SJ.

Biotechniques. 2005 May;38(5):715-6, 718, 720.

6.

Identification and characterization of novel polymorphic LINE-1 insertions through comparison of two human genome sequence assemblies.

Konkel MK, Wang J, Liang P, Batzer MA.

Gene. 2007 Apr 1;390(1-2):28-38. Epub 2006 Aug 30.

PMID:
17034961
7.

Projector 2: contig mapping for efficient gap-closure of prokaryotic genome sequence assemblies.

van Hijum SA, Zomer AL, Kuipers OP, Kok J.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W560-6.

8.

Computational comparison of human genomic sequence assemblies for a region of chromosome 4.

Semple CA, Morris SW, Porteous DJ, Evans KL.

Genome Res. 2002 Mar;12(3):424-9.

9.

Odorant and vomeronasal receptor genes in two mouse genome assemblies.

Zhang X, Rodriguez I, Mombaerts P, Firestein S.

Genomics. 2004 May;83(5):802-11.

PMID:
15081110
10.

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID:
11181995
11.

A genetic linkage map for the ectomycorrhizal fungus Laccaria bicolor and its alignment to the whole-genome sequence assemblies.

Labbé J, Zhang X, Yin T, Schmutz J, Grimwood J, Martin F, Tuskan GA, Le Tacon F.

New Phytol. 2008;180(2):316-28. doi: 10.1111/j.1469-8137.2008.02614.x. Epub 2008 Sep 8.

12.

Human-specific changes of genome structure detected by genomic triangulation.

Harris RA, Rogers J, Milosavljevic A.

Science. 2007 Apr 13;316(5822):235-7.

13.

Integrated cytogenetic BAC map of the genome of the gray, short-tailed opossum, Monodelphis domestica.

Duke SE, Samollow PB, Mauceli E, Lindblad-Toh K, Breen M.

Chromosome Res. 2007;15(3):361-70. Epub 2007 May 10.

PMID:
17406991
14.

Shotgun sequence assembly and recent segmental duplications within the human genome.

She X, Jiang Z, Clark RA, Liu G, Cheng Z, Tuzun E, Church DM, Sutton G, Halpern AL, Eichler EE.

Nature. 2004 Oct 21;431(7011):927-30.

PMID:
15496912
15.

Control of the compaction/unfolding transition of genomic DNA by the addition/disruption of lipid assemblies.

Diguet A, Baigl D.

Langmuir. 2008 Oct 7;24(19):10604-7. doi: 10.1021/la802317e. Epub 2008 Sep 10.

PMID:
18781787
16.

De novo assembly of the Pseudomonas syringae pv. syringae B728a genome using Illumina/Solexa short sequence reads.

Farrer RA, Kemen E, Jones JD, Studholme DJ.

FEMS Microbiol Lett. 2009 Feb;291(1):103-11. doi: 10.1111/j.1574-6968.2008.01441.x. Epub 2008 Dec 9.

17.

The long hard road to a completed Candida albicans genome.

Nantel A.

Fungal Genet Biol. 2006 May;43(5):311-5. Epub 2006 Mar 6. Review.

PMID:
16517185
18.

Whole genome sequencing.

Ng PC, Kirkness EF.

Methods Mol Biol. 2010;628:215-26. doi: 10.1007/978-1-60327-367-1_12. Review.

PMID:
20238084
19.

Segmental duplication density decrease with distance to human-mouse breaks of synteny.

Sainz J, Rovensky P, Gudjonsson SA, Thorleifsson G, Stefansson K, Gulcher JR.

Eur J Hum Genet. 2006 Feb;14(2):216-21.

20.

Contribution of radiation hybrids to genome mapping in domestic animals.

Faraut T, de Givry S, Hitte C, Lahbib-Mansais Y, Morisson M, Milan D, Schiex T, Servin B, Vignal A, Galibert F, Yerle M.

Cytogenet Genome Res. 2009;126(1-2):21-33. doi: 10.1159/000245904. Epub 2009 Dec 9.

PMID:
20016154

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