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Items: 1 to 20 of 110


GeneDesign: rapid, automated design of multikilobase synthetic genes.

Richardson SM, Wheelan SJ, Yarrington RM, Boeke JD.

Genome Res. 2006 Apr;16(4):550-6. Epub 2006 Feb 15.


Kismeth: analyzer of plant methylation states through bisulfite sequencing.

Gruntman E, Qi Y, Slotkin RK, Roeder T, Martienssen RA, Sachidanandam R.

BMC Bioinformatics. 2008 Sep 11;9:371. doi: 10.1186/1471-2105-9-371.


methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.

Pattyn F, Hoebeeck J, Robbrecht P, Michels E, De Paepe A, Bottu G, Coornaert D, Herzog R, Speleman F, Vandesompele J.

BMC Bioinformatics. 2006 Nov 9;7:496.


The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.


GeMS: an advanced software package for designing synthetic genes.

Jayaraj S, Reid R, Santi DV.

Nucleic Acids Res. 2005 May 23;33(9):3011-6. Print 2005.


Tools for integrated sequence-structure analysis with UCSF Chimera.

Meng EC, Pettersen EF, Couch GS, Huang CC, Ferrin TE.

BMC Bioinformatics. 2006 Jul 12;7:339.


The Synthetic Gene Designer: a flexible web platform to explore sequence manipulation for heterologous expression.

Wu G, Bashir-Bello N, Freeland SJ.

Protein Expr Purif. 2006 Jun;47(2):441-5. Epub 2005 Nov 15.


The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays.

Chen SH, Lo CZ, Tsai MC, Hsiung CA, Lin CY.

BMC Bioinformatics. 2008;9 Suppl 1:S8. doi: 10.1186/1471-2105-9-S1-S8.


Array2BIO: from microarray expression data to functional annotation of co-regulated genes.

Loots GG, Chain PS, Mabery S, Rasley A, Garcia E, Ovcharenko I.

BMC Bioinformatics. 2006 Jun 16;7:307.


GeneDesign 3.0 is an updated synthetic biology toolkit.

Richardson SM, Nunley PW, Yarrington RM, Boeke JD, Bader JS.

Nucleic Acids Res. 2010 May;38(8):2603-6. doi: 10.1093/nar/gkq143. Epub 2010 Mar 8.


ProtRepeatsDB: a database of amino acid repeats in genomes.

Kalita MK, Ramasamy G, Duraisamy S, Chauhan VS, Gupta D.

BMC Bioinformatics. 2006 Jul 7;7:336.


Design-A-Gene with GeneDesign.

Richardson SM, Liu S, Boeke JD, Bader JS.

Methods Mol Biol. 2012;852:235-47. doi: 10.1007/978-1-61779-564-0_18.


PROMPT: a protein mapping and comparison tool.

Schmidt T, Frishman D.

BMC Bioinformatics. 2006 Jul 4;7:331.

16. web-based molecular biodiversity analysis.

Singer GA, Hajibabaei M.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S14. doi: 10.1186/1471-2105-10-S6-S14.


pFind 2.0: a software package for peptide and protein identification via tandem mass spectrometry.

Wang LH, Li DQ, Fu Y, Wang HP, Zhang JF, Yuan ZF, Sun RX, Zeng R, He SM, Gao W.

Rapid Commun Mass Spectrom. 2007;21(18):2985-91.


GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.


TF Target Mapper: a BLAST search tool for the identification of Transcription Factor target genes.

Horsman S, Moorhouse MJ, de Jager VC, van der Spek P, Grosveld F, Strouboulis J, Katsantoni EZ.

BMC Bioinformatics. 2006 Mar 8;7:120.


Ebbie: automated analysis and storage of small RNA cloning data using a dynamic web server.

Ebhardt HA, Wiese KC, Unrau PJ.

BMC Bioinformatics. 2006 Apr 3;7:185.

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