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Items: 1 to 20 of 337

1.

Inferring network interactions within a cell.

Carter GW.

Brief Bioinform. 2005 Dec;6(4):380-9. Review.

PMID:
16420736
2.
3.

Gene duplication and hierarchical modularity in intracellular interaction networks.

Hallinan J.

Biosystems. 2004 Apr-Jun;74(1-3):51-62.

PMID:
15125992
4.

Detecting functional modules in the yeast protein-protein interaction network.

Chen J, Yuan B.

Bioinformatics. 2006 Sep 15;22(18):2283-90. Epub 2006 Jul 12.

PMID:
16837529
5.

Protein network inference from multiple genomic data: a supervised approach.

Yamanishi Y, Vert JP, Kanehisa M.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i363-70.

PMID:
15262821
6.

CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data.

Ma X, Lee H, Wang L, Sun F.

Bioinformatics. 2007 Jan 15;23(2):215-21. Epub 2006 Nov 10.

PMID:
17098772
7.

A Gibbs sampler for the identification of gene expression and network connectivity consistency.

Brynildsen MP, Tran LM, Liao JC.

Bioinformatics. 2006 Dec 15;22(24):3040-6. Epub 2006 Oct 23.

PMID:
17060361
8.

Understanding protein dispensability through machine-learning analysis of high-throughput data.

Chen Y, Xu D.

Bioinformatics. 2005 Mar 1;21(5):575-81. Epub 2004 Oct 12.

PMID:
15479713
9.

Discovering molecular pathways from protein interaction and gene expression data.

Segal E, Wang H, Koller D.

Bioinformatics. 2003;19 Suppl 1:i264-71.

PMID:
12855469
10.

Quantitative characterization of the transcriptional regulatory network in the yeast cell cycle.

Chen HC, Lee HC, Lin TY, Li WH, Chen BS.

Bioinformatics. 2004 Aug 12;20(12):1914-27. Epub 2004 Mar 25.

PMID:
15044243
11.

Integrated analysis of multiple data sources reveals modular structure of biological networks.

Lu H, Shi B, Wu G, Zhang Y, Zhu X, Zhang Z, Liu C, Zhao Y, Wu T, Wang J, Chen R.

Biochem Biophys Res Commun. 2006 Jun 23;345(1):302-9. Epub 2006 Apr 27.

PMID:
16690033
12.

Building and analysing genome-wide gene disruption networks.

Rung J, Schlitt T, Brazma A, Freivalds K, Vilo J.

Bioinformatics. 2002;18 Suppl 2:S202-10.

PMID:
12386004
13.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

14.

Dynamic simulation of protein complex formation on a genomic scale.

Beyer A, Wilhelm T.

Bioinformatics. 2005 Apr 15;21(8):1610-6. Epub 2004 Dec 14.

PMID:
15598828
15.

Inferring protein-protein interactions through high-throughput interaction data from diverse organisms.

Liu Y, Liu N, Zhao H.

Bioinformatics. 2005 Aug 1;21(15):3279-85. Epub 2005 May 19.

PMID:
15905281
16.

Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.

Werhli AV, Grzegorczyk M, Husmeier D.

Bioinformatics. 2006 Oct 15;22(20):2523-31. Epub 2006 Jul 14.

PMID:
16844710
17.

Functional topology in a network of protein interactions.

Przulj N, Wigle DA, Jurisica I.

Bioinformatics. 2004 Feb 12;20(3):340-8.

PMID:
14960460
18.

Computational discovery of gene modules and regulatory networks.

Bar-Joseph Z, Gerber GK, Lee TI, Rinaldi NJ, Yoo JY, Robert F, Gordon DB, Fraenkel E, Jaakkola TS, Young RA, Gifford DK.

Nat Biotechnol. 2003 Nov;21(11):1337-42. Epub 2003 Oct 12.

19.

Predicting protein functions with message passing algorithms.

Leone M, Pagnani A.

Bioinformatics. 2005 Jan 15;21(2):239-47. Epub 2004 Sep 17.

PMID:
15377508
20.

Fitting a geometric graph to a protein-protein interaction network.

Higham DJ, Rasajski M, Przulj N.

Bioinformatics. 2008 Apr 15;24(8):1093-9. doi: 10.1093/bioinformatics/btn079. Epub 2008 Mar 14.

PMID:
18344248

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