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Items: 1 to 20 of 216

1.

Literature mining for the biologist: from information retrieval to biological discovery.

Jensen LJ, Saric J, Bork P.

Nat Rev Genet. 2006 Feb;7(2):119-29. Review.

PMID:
16418747
2.

Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies?

Winnenburg R, Wächter T, Plake C, Doms A, Schroeder M.

Brief Bioinform. 2008 Nov;9(6):466-78. doi: 10.1093/bib/bbn043. Epub 2008 Dec 6. Review.

PMID:
19060303
3.

Mining chemical and biological information from the drug literature.

Banville DL.

Curr Opin Drug Discov Devel. 2009 May;12(3):376-87.

PMID:
19396739
4.

Text-based knowledge discovery: search and mining of life-sciences documents.

Mack R, Hehenberger M.

Drug Discov Today. 2002 Jun 1;7(11):S89-98. Review. Erratum in: Drug Discov Today. 2002 Sep;7(17):889.

PMID:
12047886
5.

Text-mining approaches in molecular biology and biomedicine.

Krallinger M, Erhardt RA, Valencia A.

Drug Discov Today. 2005 Mar 15;10(6):439-45. Review.

PMID:
15808823
6.

The next generation of literature analysis: integration of genomic analysis into text mining.

Scherf M, Epple A, Werner T.

Brief Bioinform. 2005 Sep;6(3):287-97. Review.

PMID:
16212776
7.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

8.

Which gene did you mean?

Mons B.

BMC Bioinformatics. 2005 Jun 7;6:142.

9.

Integrative data mining in systems biology: from text to network mining.

Peng Y, Zhang X.

Artif Intell Med. 2007 Oct;41(2):83-6. Epub 2007 Sep 20. No abstract available.

PMID:
17888638
10.

Knowledge discovery in biology and biotechnology texts: a review of techniques, evaluation strategies, and applications.

Natarajan J, Berrar D, Hack CJ, Dubitzky W.

Crit Rev Biotechnol. 2005 Jan-Jun;25(1-2):31-52. Review.

PMID:
15999851
11.

Accomplishments and challenges in literature data mining for biology.

Hirschman L, Park JC, Tsujii J, Wong L, Wu CH.

Bioinformatics. 2002 Dec;18(12):1553-61. Review.

PMID:
12490438
12.

Biomedical literature mining: challenges and solutions in the 'omics' era.

Chaussabel D.

Am J Pharmacogenomics. 2004;4(6):383-93.

PMID:
15651899
13.

A bioinformatics perspective on proteomics: data storage, analysis, and integration.

Kremer A, Schneider R, Terstappen GC.

Biosci Rep. 2005 Feb-Apr;25(1-2):95-106. Review.

PMID:
16222422
14.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

15.

Creating reference datasets for systems biology applications using text mining.

Krallinger M, Rojas AM, Valencia A.

Ann N Y Acad Sci. 2009 Mar;1158:14-28. doi: 10.1111/j.1749-6632.2008.03750.x.

PMID:
19348628
16.

Mining literature for systems biology.

Roberts PM.

Brief Bioinform. 2006 Dec;7(4):399-406. Epub 2006 Oct 10. Review.

PMID:
17032698
17.

Textpresso for neuroscience: searching the full text of thousands of neuroscience research papers.

Müller HM, Rangarajan A, Teal TK, Sternberg PW.

Neuroinformatics. 2008 Sep;6(3):195-204. doi: 10.1007/s12021-008-9031-0. Epub 2008 Oct 24.

18.

A bioinformatics knowledge discovery in text application for grid computing.

Castellano M, Mastronardi G, Bellotti R, Tarricone G.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S23. doi: 10.1186/1471-2105-10-S6-S23.

19.

Genome data mining for everyone.

Lee GW, Kim S.

BMB Rep. 2008 Nov 30;41(11):757-64. Review.

20.

Bioinformatics leads charge by publishing more Internet addresses in abstracts than any other journal.

Schilling LM, Wren JD, Dellavalle RP.

Bioinformatics. 2004 Nov 22;20(17):2903. Epub 2004 Jul 1. No abstract available.

PMID:
15231533

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