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Items: 1 to 20 of 97

1.

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005.

Riley M, Abe T, Arnaud MB, Berlyn MK, Blattner FR, Chaudhuri RR, Glasner JD, Horiuchi T, Keseler IM, Kosuge T, Mori H, Perna NT, Plunkett G 3rd, Rudd KE, Serres MH, Thomas GH, Thomson NR, Wishart D, Wanner BL.

Nucleic Acids Res. 2006 Jan 5;34(1):1-9. Print 2006.

2.

The applications of systematic in-frame, single-gene knockout mutant collection of Escherichia coli K-12.

Baba T, Huan HC, Datsenko K, Wanner BL, Mori H.

Methods Mol Biol. 2008;416:183-94. doi: 10.1007/978-1-59745-321-9_12.

PMID:
18392968
3.

Multidimensional annotation of the Escherichia coli K-12 genome.

Karp PD, Keseler IM, Shearer A, Latendresse M, Krummenacker M, Paley SM, Paulsen I, Collado-Vides J, Gama-Castro S, Peralta-Gil M, Santos-Zavaleta A, Peñaloza-Spínola MI, Bonavides-Martinez C, Ingraham J.

Nucleic Acids Res. 2007;35(22):7577-90. Epub 2007 Oct 16.

4.

EchoBASE: an integrated post-genomic database for Escherichia coli.

Misra RV, Horler RS, Reindl W, Goryanin II, Thomas GH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D329-33.

5.

GenoBase: comprehensive resource database of Escherichia coli K-12.

Otsuka Y, Muto A, Takeuchi R, Okada C, Ishikawa M, Nakamura K, Yamamoto N, Dose H, Nakahigashi K, Tanishima S, Suharnan S, Nomura W, Nakayashiki T, Aref WG, Bochner BR, Conway T, Gribskov M, Kihara D, Rudd KE, Tohsato Y, Wanner BL, Mori H.

Nucleic Acids Res. 2015 Jan;43(Database issue):D606-17. doi: 10.1093/nar/gku1164. Epub 2014 Nov 15.

6.

The nature and dynamics of bacterial genomes.

Ochman H, Davalos LM.

Science. 2006 Mar 24;311(5768):1730-3. Review.

PMID:
16556833
7.

Complete genome sequence and comparative analysis of the wild-type commensal Escherichia coli strain SE11 isolated from a healthy adult.

Oshima K, Toh H, Ogura Y, Sasamoto H, Morita H, Park SH, Ooka T, Iyoda S, Taylor TD, Hayashi T, Itoh K, Hattori M.

DNA Res. 2008 Dec;15(6):375-86. doi: 10.1093/dnares/dsn026. Epub 2008 Oct 17.

8.

Comparative proteomic and genetic analyses reveal unidentified mutations in Escherichia coli XL1-Blue and DH5α.

Xia XX, Qian ZG, Lee SY.

FEMS Microbiol Lett. 2011 Jan;314(2):119-24. doi: 10.1111/j.1574-6968.2010.02157.x. Epub 2010 Nov 26.

9.
10.
11.

EcoGene 3.0.

Zhou J, Rudd KE.

Nucleic Acids Res. 2013 Jan;41(Database issue):D613-24. doi: 10.1093/nar/gks1235. Epub 2012 Nov 28.

12.

Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments.

Krug K, Carpy A, Behrends G, Matic K, Soares NC, Macek B.

Mol Cell Proteomics. 2013 Nov;12(11):3420-30. doi: 10.1074/mcp.M113.029165. Epub 2013 Aug 1.

13.

The functional landscape bound to the transcription factors of Escherichia coli K-12.

Pérez-Rueda E, Tenorio-Salgado S, Huerta-Saquero A, Balderas-Martínez YI, Moreno-Hagelsieb G.

Comput Biol Chem. 2015 Oct;58:93-103. doi: 10.1016/j.compbiolchem.2015.06.002. Epub 2015 Jun 6.

PMID:
26094112
14.

EcoCyc: a comprehensive database resource for Escherichia coli.

Keseler IM, Collado-Vides J, Gama-Castro S, Ingraham J, Paley S, Paulsen IT, Peralta-Gil M, Karp PD.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D334-7.

15.

Leaner and meaner genomes in Escherichia coli.

Ussery DW.

Genome Biol. 2006;7(10):237. Epub 2006 Oct 24.

16.

Methods and tools for comparative genomics of foodborne pathogens.

Bhagwat AA, Bhagwat M.

Foodborne Pathog Dis. 2008 Aug;5(4):487-97. doi: 10.1089/fpd.2008.0117. Review.

17.

The evolution of the phage shock protein response system: interplay between protein function, genomic organization, and system function.

Huvet M, Toni T, Sheng X, Thorne T, Jovanovic G, Engl C, Buck M, Pinney JW, Stumpf MP.

Mol Biol Evol. 2011 Mar;28(3):1141-55. doi: 10.1093/molbev/msq301. Epub 2010 Nov 8.

18.

EcoCyc: fusing model organism databases with systems biology.

Keseler IM, Mackie A, Peralta-Gil M, Santos-Zavaleta A, Gama-Castro S, Bonavides-Martínez C, Fulcher C, Huerta AM, Kothari A, Krummenacker M, Latendresse M, Muñiz-Rascado L, Ong Q, Paley S, Schröder I, Shearer AG, Subhraveti P, Travers M, Weerasinghe D, Weiss V, Collado-Vides J, Gunsalus RP, Paulsen I, Karp PD.

Nucleic Acids Res. 2013 Jan;41(Database issue):D605-12. doi: 10.1093/nar/gks1027. Epub 2012 Nov 9.

19.

Global gene expression profiling in Escherichia coli K12: effects of oxygen availability and ArcA.

Salmon KA, Hung SP, Steffen NR, Krupp R, Baldi P, Hatfield GW, Gunsalus RP.

J Biol Chem. 2005 Apr 15;280(15):15084-96. Epub 2005 Feb 7.

20.

Conversion of commensal Escherichia coli K-12 to an invasive form via expression of a mutant histone-like protein.

Koli P, Sudan S, Fitzgerald D, Adhya S, Kar S.

MBio. 2011 Sep 6;2(5). pii: e00182-11. doi: 10.1128/mBio.00182-11. Print 2011. Erratum in: MBio. 2011;2(6). doi: 10.1128/mBio.00263-11.

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