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Abundant and diverse fungal microbiota in the murine intestine.

Scupham AJ, Presley LL, Wei B, Bent E, Griffith N, McPherson M, Zhu F, Oluwadara O, Rao N, Braun J, Borneman J.

Appl Environ Microbiol. 2006 Jan;72(1):793-801.


Oligonucleotide fingerprinting of rRNA genes for analysis of fungal community composition.

Valinsky L, Della Vedova G, Jiang T, Borneman J.

Appl Environ Microbiol. 2002 Dec;68(12):5999-6004.


Molecular diversity of fungal and bacterial communities in the marine sponge Dragmacidon reticulatum.

Passarini MR, Miqueletto PB, de Oliveira VM, Sette LD.

J Basic Microbiol. 2015 Feb;55(2):207-20. doi: 10.1002/jobm.201400466. Epub 2014 Sep 11.


Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes.

Valinsky L, Della Vedova G, Scupham AJ, Alvey S, Figueroa A, Yin B, Hartin RJ, Chrobak M, Crowley DE, Jiang T, Borneman J.

Appl Environ Microbiol. 2002 Jul;68(7):3243-50.


A culture-independent study of free-living fungi in biological soil crusts of the Colorado Plateau: their diversity and relative contribution to microbial biomass.

Bates ST, Garcia-Pichel F.

Environ Microbiol. 2009 Jan;11(1):56-67. doi: 10.1111/j.1462-2920.2008.01738.x. Epub 2008 Sep 1.


High-throughput sequencing for the detection of the bacterial and fungal diversity in Mongolian naturally fermented cow's milk in Russia.

Liu W, Zheng Y, Kwok LY, Sun Z, Zhang J, Guo Z, Hou Q, Menhe B, Zhang H.

BMC Microbiol. 2015 Feb 22;15:45. doi: 10.1186/s12866-015-0385-9.


Comparison of the cecal microbiota of domestic and wild turkeys.

Scupham AJ, Patton TG, Bent E, Bayles DO.

Microb Ecol. 2008 Aug;56(2):322-31. doi: 10.1007/s00248-007-9349-4. Epub 2008 Jan 8.


Investigation of bacterial and fungal diversity in tarag using high-throughput sequencing.

Sun Z, Liu W, Bao Q, Zhang J, Hou Q, Kwok L, Sun T, Zhang H.

J Dairy Sci. 2014 Oct;97(10):6085-96. doi: 10.3168/jds.2014-8360. Epub 2014 Aug 14.


Massive parallel 16S rRNA gene pyrosequencing reveals highly diverse fecal bacterial and fungal communities in healthy dogs and cats.

Handl S, Dowd SE, Garcia-Mazcorro JF, Steiner JM, Suchodolski JS.

FEMS Microbiol Ecol. 2011 May;76(2):301-10. doi: 10.1111/j.1574-6941.2011.01058.x. Epub 2011 Feb 14.


Pyrosequencing analysis revealed complex endogenetic microorganism community from natural DongChong XiaCao and its microhabitat.

Xia F, Liu Y, Guo MY, Shen GR, Lin J, Zhou XW.

BMC Microbiol. 2016 Aug 26;16(1):196. doi: 10.1186/s12866-016-0813-5.


Molecular analysis of bacterial communities associated with the roots of Douglas fir (Pseudotsuga menziesii) colonized by different ectomycorrhizal fungi.

Burke DJ, Dunham SM, Kretzer AM.

FEMS Microbiol Ecol. 2008 Aug;65(2):299-309. doi: 10.1111/j.1574-6941.2008.00491.x. Epub 2008 May 1.


Fungal diversity in deep-sea hydrothermal ecosystems.

Le Calvez T, Burgaud G, Mahé S, Barbier G, Vandenkoornhuyse P.

Appl Environ Microbiol. 2009 Oct;75(20):6415-21. doi: 10.1128/AEM.00653-09. Epub 2009 Jul 24.


Phylogenetic analysis and in situ identification of the intestinal microbial community of rainbow trout (Oncorhynchus mykiss, Walbaum).

Huber I, Spanggaard B, Appel KF, Rossen L, Nielsen T, Gram L.

J Appl Microbiol. 2004;96(1):117-32.


Survey of Microbial Diversity in Flood Areas during Thailand 2011 Flood Crisis Using High-Throughput Tagged Amplicon Pyrosequencing.

Mhuantong W, Wongwilaiwalin S, Laothanachareon T, Eurwilaichitr L, Tangphatsornruang S, Boonchayaanant B, Limpiyakorn T, Pattaragulwanit K, Punmatharith T, McEvoy J, Khan E, Rachakornkij M, Champreda V.

PLoS One. 2015 May 28;10(5):e0128043. doi: 10.1371/journal.pone.0128043. eCollection 2015.


Diverse bacteria inhabit living hyphae of phylogenetically diverse fungal endophytes.

Hoffman MT, Arnold AE.

Appl Environ Microbiol. 2010 Jun;76(12):4063-75. doi: 10.1128/AEM.02928-09. Epub 2010 Apr 30.


Determination of microbial diversity in meju, fermented cooked soya beans, using nested PCR-denaturing gradient gel electrophoresis.

Lee JH, Kim TW, Lee H, Chang HC, Kim HY.

Lett Appl Microbiol. 2010 Oct;51(4):388-94. doi: 10.1111/j.1472-765X.2010.02906.x. Epub 2010 Aug 5.


Bacterial and fungal microbiota in relation to probiotic therapy (VSL#3) in pouchitis.

Kühbacher T, Ott SJ, Helwig U, Mimura T, Rizzello F, Kleessen B, Gionchetti P, Blaut M, Campieri M, Fölsch UR, Kamm MA, Schreiber S.

Gut. 2006 Jun;55(6):833-41. Epub 2006 Jan 9.

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