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Items: 1 to 20 of 110

1.

ICDS database: interrupted CoDing sequences in prokaryotic genomes.

Perrodou E, Deshayes C, Muller J, Schaeffer C, Van Dorsselaer A, Ripp R, Poch O, Reyrat JM, Lecompte O.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D338-43.

2.

Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?

Deshayes C, Perrodou E, Gallien S, Euphrasie D, Schaeffer C, Van-Dorsselaer A, Poch O, Lecompte O, Reyrat JM.

Genome Biol. 2007;8(2):R20.

4.

GeneTack database: genes with frameshifts in prokaryotic genomes and eukaryotic mRNA sequences.

Antonov I, Baranov P, Borodovsky M.

Nucleic Acids Res. 2013 Jan;41(Database issue):D152-6. doi: 10.1093/nar/gks1062.

5.

MACSE: Multiple Alignment of Coding SEquences accounting for frameshifts and stop codons.

Ranwez V, Harispe S, Delsuc F, Douzery EJ.

PLoS One. 2011;6(9):e22594. doi: 10.1371/journal.pone.0022594.

6.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, Médigue C.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.

7.

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level.

Chiapello H, Gendrault A, Caron C, Blum J, Petit MA, El Karoui M.

BMC Bioinformatics. 2008 Nov 27;9:498. doi: 10.1186/1471-2105-9-498.

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10.

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.

Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D332-4.

11.

MaGe: a microbial genome annotation system supported by synteny results.

Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C.

Nucleic Acids Res. 2006 Jan 10;34(1):53-65.

12.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

13.

GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

Bioinformatics. 2005 Sep 15;21(18):3669-71.

PMID:
16076887
14.

HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection.

Puigbò P, Romeu A, Garcia-Vallvé S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D524-7.

16.

ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes.

Hu GQ, Zheng X, Yang YF, Ortet P, She ZS, Zhu H.

Nucleic Acids Res. 2008 Jan;36(Database issue):D114-9.

17.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

18.

The integrated microbial genomes (IMG) system.

Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A, Zhao X, Dubchak I, Hugenholtz P, Anderson I, Lykidis A, Mavromatis K, Ivanova N, Kyrpides NC.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D344-8.

19.

Absynte: a web tool to analyze the evolution of orthologous archaeal and bacterial gene clusters.

Despalins A, Marsit S, Oberto J.

Bioinformatics. 2011 Oct 15;27(20):2905-6. doi: 10.1093/bioinformatics/btr473.

PMID:
21840875
20.

Natural selection retains overrepresented out-of-frame stop codons against frameshift peptides in prokaryotes.

Tse H, Cai JJ, Tsoi HW, Lam EP, Yuen KY.

BMC Genomics. 2010 Sep 9;11:491. doi: 10.1186/1471-2164-11-491.

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