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Items: 1 to 20 of 176

1.

Predicting protein interaction sites from residue spatial sequence profile and evolution rate.

Wang B, Chen P, Huang DS, Li JJ, Lok TM, Lyu MR.

FEBS Lett. 2006 Jan 23;580(2):380-4. Epub 2005 Dec 19.

2.

Inferring protein-protein interacting sites using residue conservation and evolutionary information.

Wang B, Wong HS, Huang DS.

Protein Pept Lett. 2006;13(10):999-1005.

PMID:
17168822
3.
4.

Radial basis function neural network ensemble for predicting protein-protein interaction sites in heterocomplexes.

Wang B, Chen P, Wang P, Zhao G, Zhang X.

Protein Pept Lett. 2010 Sep;17(9):1111-6.

PMID:
20509853
5.

Identifying protein-protein interfacial residues in heterocomplexes using residue conservation scores.

Li JJ, Huang DS, Wang B, Chen P.

Int J Biol Macromol. 2006 May 30;38(3-5):241-7. Epub 2006 Apr 4.

PMID:
16600360
6.

Prediction of protein-protein interaction sites using support vector machines.

Koike A, Takagi T.

Protein Eng Des Sel. 2004 Feb;17(2):165-73. Epub 2004 Jan 20.

PMID:
15047913
7.

The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships.

Sato T, Yamanishi Y, Kanehisa M, Toh H.

Bioinformatics. 2005 Sep 1;21(17):3482-9. Epub 2005 Jun 30.

PMID:
15994190
8.

Estimating residue evolutionary conservation by introducing von Neumann entropy and a novel gap-treating approach.

Zhang SW, Zhang YL, Pan Q, Cheng YM, Chou KC.

Amino Acids. 2008 Aug;35(2):495-501. Epub 2007 Aug 21.

PMID:
17710364
9.

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins.

Landgraf R, Xenarios I, Eisenberg D.

J Mol Biol. 2001 Apr 13;307(5):1487-502.

PMID:
11292355
10.

Protein-protein interaction site prediction based on conditional random fields.

Li MH, Lin L, Wang XL, Liu T.

Bioinformatics. 2007 Mar 1;23(5):597-604. Epub 2007 Jan 18.

PMID:
17234636
11.

How proteins get in touch: interface prediction in the study of biomolecular complexes.

de Vries SJ, Bonvin AM.

Curr Protein Pept Sci. 2008 Aug;9(4):394-406.

PMID:
18691126
12.
13.

HSEpred: predict half-sphere exposure from protein sequences.

Song J, Tan H, Takemoto K, Akutsu T.

Bioinformatics. 2008 Jul 1;24(13):1489-97. doi: 10.1093/bioinformatics/btn222. Epub 2008 May 8.

PMID:
18467349
14.

Prediction of protein-protein interaction sites in sequences and 3D structures by random forests.

Sikić M, Tomić S, Vlahovicek K.

PLoS Comput Biol. 2009 Jan;5(1):e1000278. doi: 10.1371/journal.pcbi.1000278. Epub 2009 Jan 30.

15.

Scoring docking models with evolutionary information.

Tress M, de Juan D, Graña O, Gómez MJ, Gómez-Puertas P, González JM, López G, Valencia A.

Proteins. 2005 Aug 1;60(2):275-80.

PMID:
15981273
16.

Characterization and prediction of protein interfaces to infer protein-protein interaction networks.

Keskin O, Tuncbag N, Gursoy A.

Curr Pharm Biotechnol. 2008 Apr;9(2):67-76. Review.

PMID:
18393863
17.

Sequence-based prediction of protein interaction sites with an integrative method.

Chen XW, Jeong JC.

Bioinformatics. 2009 Mar 1;25(5):585-91. doi: 10.1093/bioinformatics/btp039. Epub 2009 Jan 19.

PMID:
19153136
18.

Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions.

Teng S, Michonova-Alexova E, Alexov E.

Curr Pharm Biotechnol. 2008 Apr;9(2):123-33. Review.

PMID:
18393868
19.

Predicting disulfide connectivity from protein sequence using multiple sequence feature vectors and secondary structure.

Song J, Yuan Z, Tan H, Huber T, Burrage K.

Bioinformatics. 2007 Dec 1;23(23):3147-54. Epub 2007 Oct 17.

PMID:
17942444
20.

Prediction of protein interaction based on similarity of phylogenetic trees.

Pazos F, Juan D, Izarzugaza JM, Leon E, Valencia A.

Methods Mol Biol. 2008;484:523-35. doi: 10.1007/978-1-59745-398-1_31.

PMID:
18592199

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