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Items: 1 to 20 of 102

1.

Evaluating HapMap SNP data transferability in a large-scale genotyping project involving 175 cancer-associated genes.

Ribas G, González-Neira A, Salas A, Milne RL, Vega A, Carracedo B, González E, Barroso E, Fernández LP, Yankilevich P, Robledo M, Carracedo A, Benítez J.

Hum Genet. 2006 Feb;118(6):669-79. Epub 2005 Dec 2. Review.

PMID:
16323010
2.

Haplotype patterns in cancer-related genes with long-range linkage disequilibrium: no evidence of association with breast cancer or positive selection.

Ribas G, Milne RL, Gonzalez-Neira A, Benítez J.

Eur J Hum Genet. 2008 Feb;16(2):252-60. Epub 2007 Nov 14.

3.

An evaluation of the performance of HapMap SNP data in a Shanghai Chinese population: analyses of allele frequency, linkage disequilibrium pattern and tagging SNPs transferability on chromosome 1q21-q25.

Hu C, Jia W, Zhang W, Wang C, Zhang R, Wang J, Ma X; International Type 2 Diabetes 1q Consortium, Xiang K.

BMC Genet. 2008 Feb 27;9:19. doi: 10.1186/1471-2156-9-19.

4.

Tag SNP selection for Finnish individuals based on the CEPH Utah HapMap database.

Willer CJ, Scott LJ, Bonnycastle LL, Jackson AU, Chines P, Pruim R, Bark CW, Tsai YY, Pugh EW, Doheny KF, Kinnunen L, Mohlke KL, Valle TT, Bergman RN, Tuomilehto J, Collins FS, Boehnke M.

Genet Epidemiol. 2006 Feb;30(2):180-90.

5.

HapMap tagSNP transferability in multiple populations: general guidelines.

Xing J, Witherspoon DJ, Watkins WS, Zhang Y, Tolpinrud W, Jorde LB.

Genomics. 2008 Jul;92(1):41-51. doi: 10.1016/j.ygeno.2008.03.011. Epub 2008 May 14.

7.

Global similarity with local differences in linkage disequilibrium between the Dutch and HapMap-CEU populations.

Pardo L, Bochdanovits Z, de Geus E, Hottenga JJ, Sullivan P, Posthuma D, Penninx BW, Boomsma D, Heutink P.

Eur J Hum Genet. 2009 Jun;17(6):802-10. doi: 10.1038/ejhg.2008.248. Epub 2009 Jan 7.

8.

Similarity in recombination rate and linkage disequilibrium at CYP2C and CYP2D cytochrome P450 gene regions among Europeans indicates signs of selection and no advantage of using tagSNPs in population isolates.

Pimenoff VN, Laval G, Comas D, Palo JU, Gut I, Cann H, Excoffier L, Sajantila A.

Pharmacogenet Genomics. 2012 Dec;22(12):846-57. doi: 10.1097/FPC.0b013e32835a3a6d.

PMID:
23089684
10.

Linkage disequilibrium patterns and tagSNP transferability among European populations.

Mueller JC, Lõhmussaar E, Mägi R, Remm M, Bettecken T, Lichtner P, Biskup S, Illig T, Pfeufer A, Luedemann J, Schreiber S, Pramstaller P, Pichler I, Romeo G, Gaddi A, Testa A, Wichmann HE, Metspalu A, Meitinger T.

Am J Hum Genet. 2005 Mar;76(3):387-98. Epub 2005 Jan 6.

11.

Evaluation of HapMap data in six populations of European descent.

Lundmark PE, Liljedahl U, Boomsma DI, Mannila H, Martin NG, Palotie A, Peltonen L, Perola M, Spector TD, Syvänen AC.

Eur J Hum Genet. 2008 Sep;16(9):1142-50. doi: 10.1038/ejhg.2008.77. Epub 2008 Apr 9.

12.

TagSNP transferability and relative loss of variability prediction from HapMap to an admixed population.

Lins TC, Abreu BS, Pereira RW.

J Biomed Sci. 2009 Aug 14;16:73. doi: 10.1186/1423-0127-16-73.

13.

A worldwide survey of haplotype variation and linkage disequilibrium in the human genome.

Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK.

Nat Genet. 2006 Nov;38(11):1251-60. Epub 2006 Oct 22.

PMID:
17057719
14.

Comparative study of the linkage disequilibrium of an ENCODE region, chromosome 7p15, in Korean, Japanese, and Han Chinese samples.

Lim J, Kim YJ, Yoon Y, Kim SO, Kang H, Park J, Han AR, Han B, Oh B, Kimm K, Yoon B, Song K.

Genomics. 2006 Mar;87(3):392-8. Epub 2006 Jan 11.

15.

Evaluating the transferability of Hapmap SNPs to a Singapore Chinese population.

Andiappan AK, Anantharaman R, Nilkanth PP, Wang de Y, Chew FT.

BMC Genet. 2010 May 7;11:36. doi: 10.1186/1471-2156-11-36.

16.

Significant variation in haplotype block structure but conservation in tagSNP patterns among global populations.

Gu S, Pakstis AJ, Li H, Speed WC, Kidd JR, Kidd KK.

Eur J Hum Genet. 2007 Mar;15(3):302-12. Epub 2007 Jan 3. Erratum in: Eur J Hum Genet. 2007 Jul;15(7):818.

17.

An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population.

Montpetit A, Nelis M, Laflamme P, Magi R, Ke X, Remm M, Cardon L, Hudson TJ, Metspalu A.

PLoS Genet. 2006 Mar;2(3):e27. Epub 2006 Mar 10.

19.

SNP identification, linkage disequilibrium, and haplotype analysis for a 200-kb genomic region in a Korean population.

Kim KJ, Lee HJ, Park MH, Cha SH, Kim KS, Kim HT, Kimm K, Oh B, Lee JY.

Genomics. 2006 Nov;88(5):535-40. Epub 2006 Aug 17.

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