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Items: 1 to 20 of 98

1.

Discover protein sequence signatures from protein-protein interaction data.

Fang J, Haasl RJ, Dong Y, Lushington GH.

BMC Bioinformatics. 2005 Nov 23;6:277.

2.

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.

Li H, Li J, Wong L.

Bioinformatics. 2006 Apr 15;22(8):989-96. Epub 2006 Jan 29.

PMID:
16446278
3.

Correlated sequence-signatures as markers of protein-protein interaction.

Sprinzak E, Margalit H.

J Mol Biol. 2001 Aug 24;311(4):681-92.

PMID:
11518523
4.

Domain-based small molecule binding site annotation.

Snyder KA, Feldman HJ, Dumontier M, Salama JJ, Hogue CW.

BMC Bioinformatics. 2006 Mar 17;7:152.

5.

Conserved network motifs allow protein-protein interaction prediction.

Albert I, Albert R.

Bioinformatics. 2004 Dec 12;20(18):3346-52. Epub 2004 Jul 9.

PMID:
15247093
6.

Predicting co-complexed protein pairs from heterogeneous data.

Qiu J, Noble WS.

PLoS Comput Biol. 2008 Apr 18;4(4):e1000054. doi: 10.1371/journal.pcbi.1000054.

7.

Identifying cooperative transcription factors in yeast using multiple data sources.

Lai FJ, Jhu MH, Chiu CC, Huang YM, Wu WS.

BMC Syst Biol. 2014;8 Suppl 5:S2. doi: 10.1186/1752-0509-8-S5-S2. Epub 2014 Dec 12.

8.

Extraction of knowledge on protein-protein interaction by association rule discovery.

Oyama T, Kitano K, Satou K, Ito T.

Bioinformatics. 2002 May;18(5):705-14. Erratum in: Bioinformatics 2002 Aug;18(8):1151.

PMID:
12050067
9.

Predicting protein functions with message passing algorithms.

Leone M, Pagnani A.

Bioinformatics. 2005 Jan 15;21(2):239-47. Epub 2004 Sep 17.

PMID:
15377508
10.

Identifying conserved protein complexes between species by constructing interolog networks.

Nguyen PV, Srihari S, Leong HW.

BMC Bioinformatics. 2013;14 Suppl 16:S8. doi: 10.1186/1471-2105-14-S16-S8. Epub 2013 Oct 22.

11.

Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.

Zhou H, Wong L.

BMC Genomics. 2011 Nov 30;12 Suppl 3:S20. doi: 10.1186/1471-2164-12-S3-S20. Epub 2011 Nov 30.

12.

POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome.

Huang TW, Tien AC, Huang WS, Lee YC, Peng CL, Tseng HH, Kao CY, Huang CY.

Bioinformatics. 2004 Nov 22;20(17):3273-6. Epub 2004 Jun 24.

PMID:
15217821
13.

Characterization of protein hubs by inferring interacting motifs from protein interactions.

Aragues R, Sali A, Bonet J, Marti-Renom MA, Oliva B.

PLoS Comput Biol. 2007 Sep;3(9):1761-71. Epub 2007 Jul 30.

14.

HPID: the Human Protein Interaction Database.

Han K, Park B, Kim H, Hong J, Park J.

Bioinformatics. 2004 Oct 12;20(15):2466-70. Epub 2004 Apr 29.

PMID:
15117749
15.

Active site profiling to identify protein functional sites in sequences and structures using the Deacon Active Site Profiler (DASP).

Fetrow JS.

Curr Protoc Bioinformatics. 2006 Jul;Chapter 8:Unit 8.10. doi: 10.1002/0471250953.bi0810s14.

PMID:
18428769
16.

Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.

Hesselberth JR, Miller JP, Golob A, Stajich JE, Michaud GA, Fields S.

Genome Biol. 2006;7(4):R30. Epub 2006 Apr 10.

17.

A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.

Zhang S, Liu HW, Ning XM, Zhang XS.

Int J Data Min Bioinform. 2009;3(1):68-84.

PMID:
19432377
18.

Predicting protein-protein interactions using signature products.

Martin S, Roe D, Faulon JL.

Bioinformatics. 2005 Jan 15;21(2):218-26. Epub 2004 Aug 19.

PMID:
15319262
19.

A hybrid clustering algorithm for identifying modules in Protein-Protein Interaction networks.

Yu L, Gao L, Sun PG.

Int J Data Min Bioinform. 2010;4(5):600-15.

PMID:
21133044
20.

Unraveling the conundrum of seemingly discordant protein-protein interaction datasets.

Gupta S, Wallqvist A, Bondugula R, Ivanic J, Reifman J.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:783-6. doi: 10.1109/IEMBS.2010.5626490.

PMID:
21096109

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