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Items: 1 to 20 of 83


Coffee and tomato share common gene repertoires as revealed by deep sequencing of seed and cherry transcripts.

Lin C, Mueller LA, Mc Carthy J, Crouzillat D, Pétiard V, Tanksley SD.

Theor Appl Genet. 2005 Dec;112(1):114-30. Epub 2005 Nov 5.


Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.

Guyot R, Lefebvre-Pautigny F, Tranchant-Dubreuil C, Rigoreau M, Hamon P, Leroy T, Hamon S, Poncet V, Crouzillat D, de Kochko A.

BMC Genomics. 2012 Mar 20;13:103. doi: 10.1186/1471-2164-13-103.


An EST-based analysis identifies new genes and reveals distinctive gene expression features of Coffea arabica and Coffea canephora.

Mondego JM, Vidal RO, Carazzolle MF, Tokuda EK, Parizzi LP, Costa GG, Pereira LF, Andrade AC, Colombo CA, Vieira LG, Pereira GA; Brazilian Coffee Genome Project Consortium.

BMC Plant Biol. 2011 Feb 8;11:30. doi: 10.1186/1471-2229-11-30.


The SOL Genomics Network: a comparative resource for Solanaceae biology and beyond.

Mueller LA, Solow TH, Taylor N, Skwarecki B, Buels R, Binns J, Lin C, Wright MH, Ahrens R, Wang Y, Herbst EV, Keyder ER, Menda N, Zamir D, Tanksley SD.

Plant Physiol. 2005 Jul;138(3):1310-7.


Comparative BAC end sequence analysis of tomato and potato reveals overrepresentation of specific gene families in potato.

Datema E, Mueller LA, Buels R, Giovannoni JJ, Visser RG, Stiekema WJ, van Ham RC.

BMC Plant Biol. 2008 Apr 11;8:34. doi: 10.1186/1471-2229-8-34.


Genome-wide identification and functional analyses of calmodulin genes in Solanaceous species.

Zhao Y, Liu W, Xu YP, Cao JY, Braam J, Cai XZ.

BMC Plant Biol. 2013 Apr 27;13:70. doi: 10.1186/1471-2229-13-70.


CoffeebEST: an integrated resource for Coffea spp expressed sequence tags.

Paschoal AR, Fernandes ED, Silva JC, Lopes FM, Pereira LF, Domingues DS.

Genet Mol Res. 2014 Dec 19;13(4):10913-20. doi: 10.4238/2014.December.19.13.


Comparative genetics of nucleotide binding site-leucine rich repeat resistance gene homologues in the genomes of two dicotyledons: tomato and arabidopsis.

Pan Q, Liu YS, Budai-Hadrian O, Sela M, Carmel-Goren L, Zamir D, Fluhr R.

Genetics. 2000 May;155(1):309-22. Erratum in: Genetics 2001 Dec;159(4):1867.


MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.


Analysis of sequence, map position, and gene expression reveals conserved essential genes for iron uptake in Arabidopsis and tomato.

Bauer P, Thiel T, Klatte M, Bereczky Z, Brumbarova T, Hell R, Grosse I.

Plant Physiol. 2004 Dec;136(4):4169-83. Epub 2004 Nov 5.


Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition.

Zhu W, Ouyang S, Iovene M, O'Brien K, Vuong H, Jiang J, Buell CR.

BMC Genomics. 2008 Jun 13;9:286. doi: 10.1186/1471-2164-9-286.


Fine mapping in tomato using microsynteny with the Arabidopsis genome: the Diageotropica (Dgt) locus.

Oh K, Hardeman K, Ivanchenko MG, Ellard-Ivey M, Nebenführ A, White TJ, Lomax TL.

Genome Biol. 2002 Aug 28;3(9):research0049. Epub 2002 Aug 28.


Genome-wide identification and characterization of the bHLH gene family in tomato.

Sun H, Fan HJ, Ling HQ.

BMC Genomics. 2015 Jan 22;16:9. doi: 10.1186/s12864-014-1209-2.


Comparative sequence analyses indicate that Coffea (Asterids) and Vitis (Rosids) derive from the same paleo-hexaploid ancestral genome.

Cenci A, Combes MC, Lashermes P.

Mol Genet Genomics. 2010 May;283(5):493-501. doi: 10.1007/s00438-010-0534-7. Epub 2010 Apr 2.


A new set of ESTs and cDNA clones from full-length and normalized libraries for gene discovery and functional characterization in citrus.

Marques MC, Alonso-Cantabrana H, Forment J, Arribas R, Alamar S, Conejero V, Perez-Amador MA.

BMC Genomics. 2009 Sep 11;10:428. doi: 10.1186/1471-2164-10-428.


454-pyrosequencing of Coffea arabica leaves infected by the rust fungus Hemileia vastatrix reveals in planta-expressed pathogen-secreted proteins and plant functions in a late compatible plant-rust interaction.

Fernandez D, Tisserant E, Talhinhas P, Azinheira H, Vieira A, Petitot AS, Loureiro A, Poulain J, Da Silva C, Silva Mdo C, Duplessis S.

Mol Plant Pathol. 2012 Jan;13(1):17-37. doi: 10.1111/j.1364-3703.2011.00723.x. Epub 2011 Jun 1.


The tomato genome: implications for plant breeding, genomics and evolution.

Ranjan A, Ichihashi Y, Sinha NR.

Genome Biol. 2012 Aug 30;13(8):167. doi: 10.1186/gb-2012-13-8-167.


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