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Items: 1 to 20 of 326

1.

CoGenT++: an extensive and extensible data environment for computational genomics.

Goldovsky L, Janssen P, Ahrén D, Audit B, Cases I, Darzentas N, Enright AJ, López-Bigas N, Peregrin-Alvarez JM, Smith M, Tsoka S, Kunin V, Ouzounis CA.

Bioinformatics. 2005 Oct 1;21(19):3806-10.

PMID:
16216832
2.

PLATCOM: a Platform for Computational Comparative Genomics.

Choi K, Ma Y, Choi JH, Kim S.

Bioinformatics. 2005 May 15;21(10):2514-6. Epub 2005 Feb 24.

PMID:
15731206
3.

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Haft DH, Selengut JD, Brinkac LM, Zafar N, White O.

Bioinformatics. 2005 Feb 1;21(3):293-306. Epub 2004 Sep 3.

PMID:
15347579
4.

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

Faith JJ, Olson AJ, Gardner TS, Sachidanandam R.

BMC Bioinformatics. 2007 Sep 18;8:344.

5.

COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics.

Janssen P, Enright AJ, Audit B, Cases I, Goldovsky L, Harte N, Kunin V, Ouzounis CA.

Bioinformatics. 2003 Jul 22;19(11):1451-2.

PMID:
12874064
6.

G-InforBIO: integrated system for microbial genomics.

Tanaka N, Abe T, Miyazaki S, Sugawara H.

BMC Bioinformatics. 2006 Aug 4;7:368.

7.

A structured interface to the object-oriented genomics unified schema for XML-formatted data.

Clark T, Jurek J, Kettler G, Preuss D.

Appl Bioinformatics. 2005;4(1):13-24.

PMID:
16000009
8.

Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology.

Goesmann A, Linke B, Rupp O, Krause L, Bartels D, Dondrup M, McHardy AC, Wilke A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):157-67.

PMID:
14651858
9.

MaGe: a microbial genome annotation system supported by synteny results.

Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C.

Nucleic Acids Res. 2006 Jan 10;34(1):53-65. Print 2006.

10.

A hybrid computational grid architecture for comparative genomics.

Singh A, Chen C, Liu W, Mitchell W, Schmidt B.

IEEE Trans Inf Technol Biomed. 2008 Mar;12(2):218-25. doi: 10.1109/TITB.2007.908462.

PMID:
18348951
11.
12.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

13.

ROSY--a flexible and universal database and bioinformatics tool platform for Roseobacter related species.

Pommerenke C, Gabriel I, Bunk B, Münch R, Haddad I, Tielen P, Wagner-Döbler I, Jahn D.

In Silico Biol. 2008;8(2):177-86.

PMID:
18928204
14.

An agent- and ontology-based system for integrating public gene, protein, and disease databases.

Alonso-Calvo R, Maojo V, Billhardt H, Martin-Sanchez F, García-Remesal M, Pérez-Rey D.

J Biomed Inform. 2007 Feb;40(1):17-29. Epub 2006 Mar 20.

15.

MANTIS: a phylogenetic framework for multi-species genome comparisons.

Tzika AC, Helaers R, Van de Peer Y, Milinkovitch MC.

Bioinformatics. 2008 Jan 15;24(2):151-7. Epub 2007 Nov 19.

PMID:
18025004
16.

Automatic annotation of organellar genomes with DOGMA.

Wyman SK, Jansen RK, Boore JL.

Bioinformatics. 2004 Nov 22;20(17):3252-5. Epub 2004 Jun 4.

PMID:
15180927
17.

Online database and bioinformatics toolbox to support data mining in cancer cytogenetics.

Baudis M.

Biotechniques. 2006 Mar;40(3):269-70, 272. No abstract available.

18.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

19.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

20.

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

Remm M, Storm CE, Sonnhammer EL.

J Mol Biol. 2001 Dec 14;314(5):1041-52.

PMID:
11743721

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