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Items: 1 to 20 of 275

1.

Understanding nature's catalytic toolkit.

Gutteridge A, Thornton JM.

Trends Biochem Sci. 2005 Nov;30(11):622-9. Epub 2005 Oct 7. Review.

PMID:
16214343
2.

Structural basis of perturbed pKa values of catalytic groups in enzyme active sites.

Harris TK, Turner GJ.

IUBMB Life. 2002 Feb;53(2):85-98. Review.

3.

Analysis of catalytic residues in enzyme active sites.

Bartlett GJ, Porter CT, Borkakoti N, Thornton JM.

J Mol Biol. 2002 Nov 15;324(1):105-21.

PMID:
12421562
4.

Enzymes: chemistry and biochemistry.

Jeffery J.

EXS. 1995;73:79-104. Review.

PMID:
7579980
5.

Catalysing new reactions during evolution: economy of residues and mechanism.

Bartlett GJ, Borkakoti N, Thornton JM.

J Mol Biol. 2003 Aug 22;331(4):829-60.

PMID:
12909013
6.

Analysis and prediction of the location of catalytic residues in enzymes.

Zvelebil MJ, Sternberg MJ.

Protein Eng. 1988 Jul;2(2):127-38.

PMID:
3244695
7.

Stability for function trade-offs in the enolase superfamily "catalytic module".

Nagatani RA, Gonzalez A, Shoichet BK, Brinen LS, Babbitt PC.

Biochemistry. 2007 Jun 12;46(23):6688-95. Epub 2007 May 16.

PMID:
17503785
8.

Improving nature's enzyme active site with genetically encoded unnatural amino acids.

Jackson JC, Duffy SP, Hess KR, Mehl RA.

J Am Chem Soc. 2006 Aug 30;128(34):11124-7.

PMID:
16925430
9.

The chemistry of protein catalysis.

Holliday GL, Almonacid DE, Mitchell JB, Thornton JM.

J Mol Biol. 2007 Oct 5;372(5):1261-77. Epub 2007 Aug 2.

PMID:
17727879
10.
11.

The geometry of interactions between catalytic residues and their substrates.

Torrance JW, Holliday GL, Mitchell JB, Thornton JM.

J Mol Biol. 2007 Jun 15;369(4):1140-52. Epub 2007 Mar 24.

PMID:
17466330
12.

Novel cofactors via post-translational modifications of enzyme active sites.

Okeley NM, van der Donk WA.

Chem Biol. 2000 Jul;7(7):R159-71. Review. Erratum in: Chem Biol 2001 Jan;8(1):97.

13.

Sequence and structural features of enzymes and their active sites by EC class.

Bray T, Doig AJ, Warwicker J.

J Mol Biol. 2009 Mar 13;386(5):1423-36. doi: 10.1016/j.jmb.2008.11.057. Epub 2008 Dec 10.

PMID:
19100748
14.

Understanding the functional roles of amino acid residues in enzyme catalysis.

Holliday GL, Mitchell JB, Thornton JM.

J Mol Biol. 2009 Jul 17;390(3):560-77. doi: 10.1016/j.jmb.2009.05.015. Epub 2009 May 15.

PMID:
19447117
16.

Characterization of enzyme motions by solution NMR relaxation dispersion.

Loria JP, Berlow RB, Watt ED.

Acc Chem Res. 2008 Feb;41(2):214-21. doi: 10.1021/ar700132n. Epub 2008 Feb 19. Review.

PMID:
18281945
17.

The guanidino-group modifying enzymes: structural basis for their diversity and commonality.

Shirai H, Mokrab Y, Mizuguchi K.

Proteins. 2006 Sep 1;64(4):1010-23.

PMID:
16779844
18.

A novel approach to predict active sites of enzyme molecules.

Chou KC, Cai YD.

Proteins. 2004 Apr 1;55(1):77-82.

PMID:
14997541
19.

Active site flexibility in enzyme catalysis.

Tsou CL.

Ann N Y Acad Sci. 1998 Dec 13;864:1-8. Review.

PMID:
9928078
20.

Evolutionary optimization of computationally designed enzymes: Kemp eliminases of the KE07 series.

Khersonsky O, Röthlisberger D, Dym O, Albeck S, Jackson CJ, Baker D, Tawfik DS.

J Mol Biol. 2010 Mar 5;396(4):1025-42. doi: 10.1016/j.jmb.2009.12.031. Epub 2009 Dec 28.

PMID:
20036254

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