Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 195

1.

Protein flexibility: multiple molecular dynamics simulations of insulin chain B.

Legge FS, Budi A, Treutlein H, Yarovsky I.

Biophys Chem. 2006 Jan 20;119(2):146-57. Epub 2005 Aug 29.

PMID:
16129550
2.
4.

Scaling behavior and structure of denatured proteins.

Ding F, Jha RK, Dokholyan NV.

Structure. 2005 Jul;13(7):1047-54.

7.

Two-dimensional NMR and photo-CIDNP studies of the insulin monomer: assignment of aromatic resonances with application to protein folding, structure, and dynamics.

Weiss MA, Nguyen DT, Khait I, Inouye K, Frank BH, Beckage M, O'Shea E, Shoelson SE, Karplus M, Neuringer LJ.

Biochemistry. 1989 Dec 12;28(25):9855-73.

PMID:
2692717
8.

Targeted molecular dynamics: a new approach for searching pathways of conformational transitions.

Schlitter J, Engels M, Krüger P.

J Mol Graph. 1994 Jun;12(2):84-9.

PMID:
7918256
9.
10.

How sensitive are nanosecond molecular dynamics simulations of proteins to changes in the force field?

Villa A, Fan H, Wassenaar T, Mark AE.

J Phys Chem B. 2007 May 31;111(21):6015-25. Epub 2007 May 10.

PMID:
17489626
11.

Conformational sampling using high-temperature molecular dynamics.

Bruccoleri RE, Karplus M.

Biopolymers. 1990 Dec;29(14):1847-62.

PMID:
2207289
12.

Helix motion in protein C12A-p8(MTCP1): comparison of molecular dynamics simulations and multifield NMR relaxation data.

Barthe P, Roumestand C, Déméné H, Chiche L.

J Comput Chem. 2002 Dec;23(16):1577-86.

PMID:
12395426
13.

Systematic comparison of empirical forcefields for molecular dynamic simulation of insulin.

Todorova N, Legge FS, Treutlein H, Yarovsky I.

J Phys Chem B. 2008 Sep 4;112(35):11137-46. doi: 10.1021/jp076825d. Epub 2008 Aug 12.

PMID:
18698702
14.
15.

Probing the free energy landscape of the FBP28WW domain using multiple techniques.

Periole X, Allen LR, Tamiola K, Mark AE, Paci E.

J Comput Chem. 2009 May;30(7):1059-68. doi: 10.1002/jcc.21128.

PMID:
18942730
16.

Electric field effects on insulin chain-B conformation.

Budi A, Legge FS, Treutlein H, Yarovsky I.

J Phys Chem B. 2005 Dec 1;109(47):22641-8.

PMID:
16853947
17.

Interpreting NMR data for beta-peptides using molecular dynamics simulations.

Trzesniak D, Glättli A, Jaun B, van Gunsteren WF.

J Am Chem Soc. 2005 Oct 19;127(41):14320-9.

PMID:
16218626
18.

Time-resolved computational protein biochemistry: solvent effects on interactions, conformational transitions and equilibrium fluctuations.

Tournier AL, Huang D, Schwarzl SM, Fischer S, Smith JC.

Faraday Discuss. 2003;122:243-51; discussion 269-82.

PMID:
12555861
19.

Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.

Eberini I, Guerini Rocco A, Ientile AR, Baptista AM, Gianazza E, Tomaselli S, Molinari H, Ragona L.

Proteins. 2008 Jun;71(4):1889-98. doi: 10.1002/prot.21875.

PMID:
18175325
20.

Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding.

Korzhnev DM, Kay LE.

Acc Chem Res. 2008 Mar;41(3):442-51. doi: 10.1021/ar700189y. Epub 2008 Feb 15. Review.

PMID:
18275162

Supplemental Content

Support Center