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Items: 1 to 20 of 64

1.

Genome update: prediction of membrane proteins in prokaryotic genomes.

Bendtsen JD, Binnewies TT, Hallin PF, Ussery DW.

Microbiology. 2005 Jul;151(Pt 7):2119-21. No abstract available.

PMID:
16000701
2.

Comparative analysis of amino acid distributions in integral membrane proteins from 107 genomes.

Nilsson J, Persson B, von Heijne G.

Proteins. 2005 Sep 1;60(4):606-16.

PMID:
16028222
3.

Cell surface proteins in archaeal and bacterial genomes comprising "LVIVD", "RIVW" and "LGxL" tandem sequence repeats are predicted to fold as beta-propeller.

Adindla S, Inampudi KK, Guruprasad L.

Int J Biol Macromol. 2007 Oct 1;41(4):454-68. Epub 2007 Jun 17.

PMID:
17681373
4.

Structural classification and prediction of reentrant regions in alpha-helical transmembrane proteins: application to complete genomes.

Viklund H, Granseth E, Elofsson A.

J Mol Biol. 2006 Aug 18;361(3):591-603. Epub 2006 Jul 5.

PMID:
16860824
5.

Genome update: sigma factors in 240 bacterial genomes.

Kill K, Binnewies TT, Sicheritz-Pontén T, Willenbrock H, Hallin PF, Wassenaar TM, Ussery DW.

Microbiology. 2005 Oct;151(Pt 10):3147-50. No abstract available.

PMID:
16207898
6.
7.

Structural genomics for membrane proteins.

Lundstrom K.

Cell Mol Life Sci. 2006 Nov;63(22):2597-607. Review.

PMID:
17013556
8.
9.

TMBETA-GENOME: database for annotated beta-barrel membrane proteins in genomic sequences.

Gromiha MM, Yabuki Y, Kundu S, Suharnan S, Suwa M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D314-6. Epub 2006 Nov 6.

10.

A universal operon predictor for prokaryotic genomes.

Li G, Che D, Xu Y.

J Bioinform Comput Biol. 2009 Feb;7(1):19-38.

PMID:
19226658
11.

Experimentally constrained topology models for 51,208 bacterial inner membrane proteins.

Granseth E, Daley DO, Rapp M, Melén K, von Heijne G.

J Mol Biol. 2005 Sep 23;352(3):489-94.

PMID:
16120447
12.

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.

Bigelow H, Rost B.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W186-8.

14.

Comparative genome analysis of Bacillus cereus group genomes with Bacillus subtilis.

Anderson I, Sorokin A, Kapatral V, Reznik G, Bhattacharya A, Mikhailova N, Burd H, Joukov V, Kaznadzey D, Walunas T, Markd'Souza, Larsen N, Pusch G, Liolios K, Grechkin Y, Lapidus A, Goltsman E, Chu L, Fonstein M, Ehrlich SD, Overbeek R, Kyrpides N, Ivanova N.

FEMS Microbiol Lett. 2005 Sep 15;250(2):175-84.

15.

A proteome-wide analysis of domain architectures of prokaryotic single-spanning transmembrane proteins.

Arai M, Fukushi T, Satake M, Shimizu T.

Comput Biol Chem. 2005 Oct;29(5):379-87. Epub 2005 Oct 6.

PMID:
16213795
16.

Analysis of tandem repeats found in 44 prokaryotic genomes.

Mizuta S, Munakata H, Aimaiti A, Oya I, Oosawa K, Shimizu T.

In Silico Biol. 2006;6(1-2):147-59.

PMID:
17009421
17.

Genome Update: Protein secretion systems in 225 bacterial genomes.

Binnewies TT, Bendtsen JD, Hallin PF, Nielsen N, Wassenaar TM, Pedersen MB, Klemm P, Ussery DW.

Microbiology. 2005 Apr;151(Pt 4):1013-6. No abstract available.

PMID:
15817770
18.

Structural basis for membrane anchorage of viral phi29 DNA during replication.

Albert A, Muñoz-Espín D, Jiménez M, Asensio JL, Hermoso JA, Salas M, Meijer WJ.

J Biol Chem. 2005 Dec 30;280(52):42486-8. Epub 2005 Nov 7.

19.

Asymmetry in membrane protein sequence and structure: glycine outside rule.

Jin W, Takada S.

J Mol Biol. 2008 Mar 14;377(1):74-82. doi: 10.1016/j.jmb.2008.01.013. Epub 2008 Jan 15.

PMID:
18255095
20.

The functions of Sco proteins from genome-based analysis.

Banci L, Bertini I, Cavallaro G, Rosato A.

J Proteome Res. 2007 Apr;6(4):1568-79. Epub 2007 Feb 15.

PMID:
17300187

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