Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 240

1.

PISCES: recent improvements to a PDB sequence culling server.

Wang G, Dunbrack RL Jr.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W94-8.

2.

PISCES: a protein sequence culling server.

Wang G, Dunbrack RL Jr.

Bioinformatics. 2003 Aug 12;19(12):1589-91.

PMID:
12912846
3.

ZifBASE: a database of zinc finger proteins and associated resources.

Jayakanthan M, Muthukumaran J, Chandrasekar S, Chawla K, Punetha A, Sundar D.

BMC Genomics. 2009 Sep 9;10:421. doi: 10.1186/1471-2164-10-421.

4.

Structure SNP (StSNP): a web server for mapping and modeling nsSNPs on protein structures with linkage to metabolic pathways.

Uzun A, Leslin CM, Abyzov A, Ilyin V.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W384-92. Epub 2007 May 30.

5.

PDBalert: automatic, recurrent remote homology tracking and protein structure prediction.

Agarwal V, Remmert M, Biegert A, Söding J.

BMC Struct Biol. 2008 Nov 25;8:51. doi: 10.1186/1472-6807-8-51.

6.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

7.

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-Coffee.

Armougom F, Moretti S, Poirot O, Audic S, Dumas P, Schaeli B, Keduas V, Notredame C.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W604-8.

8.

ProtBuD: a database of biological unit structures of protein families and superfamilies.

Xu Q, Canutescu A, Obradovic Z, Dunbrack RL Jr.

Bioinformatics. 2006 Dec 1;22(23):2876-82. Epub 2006 Oct 2. Erratum in: Bioinformatics. 2007 Aug;23(15):2028.

PMID:
17018535
9.

PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.

10.

Comparative modeling of CASP3 targets using PSI-BLAST and SCWRL.

Dunbrack RL Jr.

Proteins. 1999;Suppl 3:81-7.

PMID:
10526356
11.

pKNOT: the protein KNOT web server.

Lai YL, Yen SC, Yu SH, Hwang JK.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W420-4. Epub 2007 May 25.

12.

Sequence-similar, structure-dissimilar protein pairs in the PDB.

Kosloff M, Kolodny R.

Proteins. 2008 May 1;71(2):891-902.

13.

Indel PDB: a database of structural insertions and deletions derived from sequence alignments of closely related proteins.

Hsing M, Cherkasov A.

BMC Bioinformatics. 2008 Jun 25;9:293. doi: 10.1186/1471-2105-9-293.

14.

PROMALS3D web server for accurate multiple protein sequence and structure alignments.

Pei J, Tang M, Grishin NV.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W30-4. doi: 10.1093/nar/gkn322. Epub 2008 May 24.

15.

VADAR: a web server for quantitative evaluation of protein structure quality.

Willard L, Ranjan A, Zhang H, Monzavi H, Boyko RF, Sykes BD, Wishart DS.

Nucleic Acids Res. 2003 Jul 1;31(13):3316-9.

16.

coliSNP database server mapping nsSNPs on protein structures.

Kono H, Yuasa T, Nishiue S, Yura K.

Nucleic Acids Res. 2008 Jan;36(Database issue):D409-13. Epub 2007 Oct 5.

17.

COPid: composition based protein identification.

Kumar M, Thakur V, Raghava GP.

In Silico Biol. 2008;8(2):121-8.

PMID:
18928200
18.

DMAPS: a database of multiple alignments for protein structures.

Guda C, Pal LR, Shindyalov IN.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D273-6.

19.

The ASTRAL Compendium in 2004.

Chandonia JM, Hon G, Walker NS, Lo Conte L, Koehl P, Levitt M, Brenner SE.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D189-92.

20.

Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments.

Przybylski D, Rost B.

Nucleic Acids Res. 2007;35(7):2238-46. Epub 2007 Mar 16.

Supplemental Content

Support Center