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Links from PubMed

Items: 1 to 20 of 167

1.

GoPubMed: exploring PubMed with the Gene Ontology.

Doms A, Schroeder M.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W783-6.

2.

Semantically linking and browsing PubMed abstracts with gene ontology.

Vanteru BC, Shaik JS, Yeasin M.

BMC Genomics. 2008;9 Suppl 1:S10. doi: 10.1186/1471-2164-9-S1-S10.

4.

PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts.

Goetz T, von der Lieth CW.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W774-8.

5.

GO2PUB: Querying PubMed with semantic expansion of gene ontology terms.

Bettembourg C, Diot C, Burgun A, Dameron O.

J Biomed Semantics. 2012 Sep 7;3(1):7. doi: 10.1186/2041-1480-3-7.

6.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW.

PLoS Biol. 2004 Nov;2(11):e309. Epub 2004 Sep 21.

7.

Improving subcellular localization prediction using text classification and the gene ontology.

Fyshe A, Liu Y, Szafron D, Greiner R, Lu P.

Bioinformatics. 2008 Nov 1;24(21):2512-7. doi: 10.1093/bioinformatics/btn463. Epub 2008 Aug 26.

PMID:
18728042
8.

LitMiner and WikiGene: identifying problem-related key players of gene regulation using publication abstracts.

Maier H, Döhr S, Grote K, O'Keeffe S, Werner T, Hrabé de Angelis M, Schneider R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W779-82.

9.

Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens.

Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G 3rd, Shaker M, Pot D.

BMC Bioinformatics. 2009 Jun 10;10:177. doi: 10.1186/1471-2105-10-177.

10.

AliBaba: PubMed as a graph.

Plake C, Schiemann T, Pankalla M, Hakenberg J, Leser U.

Bioinformatics. 2006 Oct 1;22(19):2444-5. Epub 2006 Jul 26.

PMID:
16870931
11.

SciMiner: web-based literature mining tool for target identification and functional enrichment analysis.

Hur J, Schuyler AD, States DJ, Feldman EL.

Bioinformatics. 2009 Mar 15;25(6):838-40. doi: 10.1093/bioinformatics/btp049. Epub 2009 Feb 2.

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14.

GIS: a biomedical text-mining system for gene information discovery.

Chiang JH, Yu HC, Hsu HJ.

Bioinformatics. 2004 Jan 1;20(1):120-1.

PMID:
14693818
15.

AmiGO: online access to ontology and annotation data.

Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub.; Web Presence Working Group..

Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615. Epub 2008 Nov 25.

16.

Text processing through Web services: calling Whatizit.

Rebholz-Schuhmann D, Arregui M, Gaudan S, Kirsch H, Jimeno A.

Bioinformatics. 2008 Jan 15;24(2):296-8. Epub 2007 Nov 15.

PMID:
18006544
17.

Searching biomedical databases on complementary medicine: the use of controlled vocabulary among authors, indexers and investigators.

Murphy LS, Reinsch S, Najm WI, Dickerson VM, Seffinger MA, Adams A, Mishra SI.

BMC Complement Altern Med. 2003 Jul 7;3:3. Epub 2003 Jul 7.

18.

Onto-CC: a web server for identifying Gene Ontology conceptual clusters.

Romero-Zaliz R, Del Val C, Cobb JP, Zwir I.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W352-7. doi: 10.1093/nar/gkn323. Epub 2008 Jun 10.

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WEGO: a web tool for plotting GO annotations.

Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L, Wang J.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W293-7.

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