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Items: 1 to 20 of 227

3.

PCI-SS: MISO dynamic nonlinear protein secondary structure prediction.

Green JR, Korenberg MJ, Aboul-Magd MO.

BMC Bioinformatics. 2009 Jul 17;10:222. doi: 10.1186/1471-2105-10-222.

4.

PSPP: a protein structure prediction pipeline for computing clusters.

Lee MS, Bondugula R, Desai V, Zavaljevski N, Yeh IC, Wallqvist A, Reifman J.

PLoS One. 2009 Jul 16;4(7):e6254. doi: 10.1371/journal.pone.0006254.

6.

CATHEDRAL: a fast and effective algorithm to predict folds and domain boundaries from multidomain protein structures.

Redfern OC, Harrison A, Dallman T, Pearl FM, Orengo CA.

PLoS Comput Biol. 2007 Nov;3(11):e232.

7.

M4T: a comparative protein structure modeling server.

Fernandez-Fuentes N, Madrid-Aliste CJ, Rai BK, Fajardo JE, Fiser A.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W363-8.

8.

Structure of the adenovirus E4 Orf6 protein predicted by fold recognition and comparative protein modeling.

Brown LM, Gonzalez RA, Novotny J, Flint SJ.

Proteins. 2001 Aug 1;44(2):97-109.

PMID:
11391772
9.

Pairwise covariance adds little to secondary structure prediction but improves the prediction of non-canonical local structure.

Bystroff C, Webb-Robertson BJ.

BMC Bioinformatics. 2008 Oct 10;9:429. doi: 10.1186/1471-2105-9-429.

10.

Protein structure prediction using a combination of sequence-based alignment, constrained energy minimization, and structural alignment.

Standley DM, Eyrich VA, An Y, Pincus DL, Gunn JR, Friesner RA.

Proteins. 2001;Suppl 5:133-9.

PMID:
11835490
11.

The prediction of amphiphilic alpha-helices.

Phoenix DA, Harris F, Daman OA, Wallace J.

Curr Protein Pept Sci. 2002 Apr;3(2):201-21. Review.

PMID:
12188904
12.

Modelling interaction sites in protein domains with interaction profile hidden Markov models.

Friedrich T, Pils B, Dandekar T, Schultz J, Müller T.

Bioinformatics. 2006 Dec 1;22(23):2851-7.

13.
14.

[Membrane probability profile construction based on amino acids sequences multiple alignment].

Sutormin RA, Mironov AA.

Mol Biol (Mosk). 2006 May-Jun;40(3):541-5. Russian.

PMID:
16813173
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17.

ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.

18.

PROMALS3D web server for accurate multiple protein sequence and structure alignments.

Pei J, Tang M, Grishin NV.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W30-4. doi: 10.1093/nar/gkn322.

19.

Enhanced protein fold recognition using a structural alphabet.

Deschavanne P, Tufféry P.

Proteins. 2009 Jul;76(1):129-37. doi: 10.1002/prot.22324.

PMID:
19089985
20.

Accurate prediction of stability changes in protein mutants by combining machine learning with structure based computational mutagenesis.

Masso M, Vaisman II.

Bioinformatics. 2008 Sep 15;24(18):2002-9. doi: 10.1093/bioinformatics/btn353.

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