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Items: 1 to 20 of 155

1.

Simulation and experiment conspire to reveal cryptic intermediates and a slide from the nucleation-condensation to framework mechanism of folding.

White GW, Gianni S, Grossmann JG, Jemth P, Fersht AR, Daggett V.

J Mol Biol. 2005 Jul 22;350(4):757-75.

PMID:
15967458
3.

Simulation and experiment at high temperatures: ultrafast folding of a thermophilic protein by nucleation-condensation.

Ferguson N, Day R, Johnson CM, Allen MD, Daggett V, Fersht AR.

J Mol Biol. 2005 Apr 8;347(4):855-70.

PMID:
15769475
4.

Testing protein-folding simulations by experiment: B domain of protein A.

Sato S, Religa TL, Daggett V, Fersht AR.

Proc Natl Acad Sci U S A. 2004 May 4;101(18):6952-6. Epub 2004 Apr 6.

5.

Multiple folding mechanisms of protein ubiquitin.

Zhang J, Qin M, Wang W.

Proteins. 2005 May 15;59(3):565-79.

PMID:
15768406
6.

The structure of the major transition state for folding of an FF domain from experiment and simulation.

Jemth P, Day R, Gianni S, Khan F, Allen M, Daggett V, Fersht AR.

J Mol Biol. 2005 Jul 8;350(2):363-78.

PMID:
15935381
7.

The complete folding pathway of a protein from nanoseconds to microseconds.

Mayor U, Guydosh NR, Johnson CM, Grossmann JG, Sato S, Jas GS, Freund SM, Alonso DO, Daggett V, Fersht AR.

Nature. 2003 Feb 20;421(6925):863-7.

PMID:
12594518
8.

Helix nucleation kinetics from molecular simulations in explicit solvent.

Hummer G, García AE, Garde S.

Proteins. 2001 Jan 1;42(1):77-84.

PMID:
11093262
9.

Unifying features in protein-folding mechanisms.

Gianni S, Guydosh NR, Khan F, Caldas TD, Mayor U, White GW, DeMarco ML, Daggett V, Fersht AR.

Proc Natl Acad Sci U S A. 2003 Nov 11;100(23):13286-91. Epub 2003 Oct 31.

11.

The long and short flavodoxins: II. The role of the differentiating loop in apoflavodoxin stability and folding mechanism.

López-Llano J, Maldonado S, Jain S, Lostao A, Godoy-Ruiz R, Sanchez-Ruiz JM, Cortijo M, Fernández-Recio J, Sancho J.

J Biol Chem. 2004 Nov 5;279(45):47184-91. Epub 2004 Aug 17.

12.

The folding pathway of spectrin R17 from experiment and simulation: using experimentally validated MD simulations to characterize States hinted at by experiment.

Scott KA, Randles LG, Moran SJ, Daggett V, Clarke J.

J Mol Biol. 2006 May 26;359(1):159-73. Epub 2006 Mar 21.

PMID:
16618492
13.

Unveiling a hidden folding intermediate in c-type cytochromes by protein engineering.

Borgia A, Bonivento D, Travaglini-Allocatelli C, Di Matteo A, Brunori M.

J Biol Chem. 2006 Apr 7;281(14):9331-6. Epub 2006 Feb 1.

14.

Folding of the KIX domain: characterization of the equilibrium analog of a folding intermediate using 15N/13C relaxation dispersion and fast 1H/2H amide exchange NMR spectroscopy.

Schanda P, Brutscher B, Konrat R, Tollinger M.

J Mol Biol. 2008 Jul 18;380(4):726-41. doi: 10.1016/j.jmb.2008.05.040. Epub 2008 May 24.

PMID:
18565542
15.
16.

Application of the diffusion-collision model to the folding of three-helix bundle proteins.

Islam SA, Karplus M, Weaver DL.

J Mol Biol. 2002 Apr 19;318(1):199-215.

PMID:
12054779
17.

Helix mutations stabilize a late productive intermediate on the folding pathway of ubiquitin.

Rea AM, Simpson ER, Crespo MD, Searle MS.

Biochemistry. 2008 Aug 5;47(31):8225-36. doi: 10.1021/bi800722d. Epub 2008 Jul 11.

PMID:
18616284
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