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Items: 1 to 20 of 88

1.

Tools enabling the elucidation of molecular pathways active in human disease: application to Hepatitis C virus infection.

Reiss DJ, Avila-Campillo I, Thorsson V, Schwikowski B, Galitski T.

BMC Bioinformatics. 2005 Jun 20;6:154.

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3.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

4.

Analysis of protein interaction networks for the detection of candidate hepatitis B and C biomarkers.

Simos T, Georgopoulou U, Thyphronitis G, Koskinas J, Papaloukas C.

IEEE J Biomed Health Inform. 2015 Jan;19(1):181-9. doi: 10.1109/JBHI.2014.2344732. Epub 2014 Jul 31.

PMID:
25099894
5.

The Annotation, Mapping, Expression and Network (AMEN) suite of tools for molecular systems biology.

Chalmel F, Primig M.

BMC Bioinformatics. 2008 Feb 6;9:86. doi: 10.1186/1471-2105-9-86.

6.

Network legos: building blocks of cellular wiring diagrams.

Murali TM, Rivera CG.

J Comput Biol. 2008 Sep;15(7):829-44. doi: 10.1089/cmb.2007.0139.

PMID:
18707557
7.

Internet-based Profiler system as integrative framework to support translational research.

Kim R, Demichelis F, Tang J, Riva A, Shen R, Gibbs DF, Mahavishno V, Chinnaiyan AM, Rubin MA.

BMC Bioinformatics. 2005 Dec 19;6:304.

8.

A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.

9.

p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.

Sbisà E, Catalano D, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C, Gisel A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S20.

10.

BiologicalNetworks: visualization and analysis tool for systems biology.

Baitaluk M, Sedova M, Ray A, Gupta A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W466-71.

12.

Gene expression trends and protein features effectively complement each other in gene function prediction.

Wabnik K, Hvidsten TR, Kedzierska A, Van Leene J, De Jaeger G, Beemster GT, Komorowski J, Kuiper MT.

Bioinformatics. 2009 Feb 1;25(3):322-30. doi: 10.1093/bioinformatics/btn625. Epub 2008 Dec 2.

PMID:
19050035
13.

ExonMiner: Web service for analysis of GeneChip Exon array data.

Numata K, Yoshida R, Nagasaki M, Saito A, Imoto S, Miyano S.

BMC Bioinformatics. 2008 Nov 26;9:494. doi: 10.1186/1471-2105-9-494.

14.

SiPaGene: A new repository for instant online retrieval, sharing and meta-analyses of GeneChip expression data.

Menssen A, Edinger G, Grün JR, Haase U, Baumgrass R, Grützkau A, Radbruch A, Burmester GR, Häupl T.

BMC Genomics. 2009 Mar 5;10:98. doi: 10.1186/1471-2164-10-98.

15.

Experimental approaches to identify genetic networks.

Costanzo M, Giaever G, Nislow C, Andrews B.

Curr Opin Biotechnol. 2006 Oct;17(5):472-80. Epub 2006 Sep 8. Review.

PMID:
16962766
16.
17.

MARS: microarray analysis, retrieval, and storage system.

Maurer M, Molidor R, Sturn A, Hartler J, Hackl H, Stocker G, Prokesch A, Scheideler M, Trajanoski Z.

BMC Bioinformatics. 2005 Apr 18;6:101.

18.

CABIN: collective analysis of biological interaction networks.

Singhal M, Domico K.

Comput Biol Chem. 2007 Jun;31(3):222-5. Epub 2007 Mar 30.

PMID:
17500038
19.

ENCODE tiling array analysis identifies differentially expressed annotated and novel 5' capped RNAs in hepatitis C infected liver.

Folkers ME, Delker DA, Maxwell CI, Nelson CA, Schwartz JJ, Nix DA, Hagedorn CH.

PLoS One. 2011 Feb 16;6(2):e14697. doi: 10.1371/journal.pone.0014697.

20.

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