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Items: 1 to 20 of 68

1.

DNA-BAR: distinguisher selection for DNA barcoding.

DasGupta B, Konwar KM, Mandoiu II, Shvartsman AA.

Bioinformatics. 2005 Aug 15;21(16):3424-6. Epub 2005 Jun 16.

PMID:
15961439
2.

GenomeMatcher: a graphical user interface for DNA sequence comparison.

Ohtsubo Y, Ikeda-Ohtsubo W, Nagata Y, Tsuda M.

BMC Bioinformatics. 2008 Sep 16;9:376. doi: 10.1186/1471-2105-9-376.

3.

SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets.

Lai C, Horlings HM, van de Vijver MJ, van Beers EH, Nederlof PM, Wessels LF, Reinders MJ.

BMC Bioinformatics. 2007 Oct 30;8:422.

4.

CGHMultiArray: exact P-values for multi-array comparative genomic hybridization data.

van de Wiel MA, Smeets SJ, Brakenhoff RH, Ylstra B.

Bioinformatics. 2005 Jul 15;21(14):3193-4. Epub 2005 May 6.

PMID:
15879450
5.

MPDA: microarray pooled DNA analyzer.

Yang HC, Huang MC, Li LH, Lin CH, Yu AL, Diccianni MB, Wu JY, Chen YT, Fann CS.

BMC Bioinformatics. 2008 Apr 15;9:196. doi: 10.1186/1471-2105-9-196.

6.

Efficient identification of DNA hybridization partners in a sequence database.

Mann TP, Noble WS.

Bioinformatics. 2006 Jul 15;22(14):e350-8.

PMID:
16873493
7.

WindowMasker: window-based masker for sequenced genomes.

Morgulis A, Gertz EM, Schäffer AA, Agarwala R.

Bioinformatics. 2006 Jan 15;22(2):134-41. Epub 2005 Nov 15.

PMID:
16287941
8.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

PMID:
17332025
9.

DNAVis: interactive visualization of comparative genome annotations.

Fiers MW, van de Wetering H, Peeters TH, van Wijk JJ, Nap JP.

Bioinformatics. 2006 Feb 1;22(3):354-5. Epub 2005 Dec 6.

PMID:
16332715
10.

Efficient algorithms and software for detection of full-length LTR retrotransposons.

Kalyanaraman A, Aluru S.

J Bioinform Comput Biol. 2006 Apr;4(2):197-216.

PMID:
16819780
11.

A fast and flexible method for the segmentation of aCGH data.

Ben-Yaacov E, Eldar YC.

Bioinformatics. 2008 Aug 15;24(16):i139-45. doi: 10.1093/bioinformatics/btn272.

PMID:
18689815
12.

Detection of gene copy number changes in CGH microarrays using a spatially correlated mixture model.

Broët P, Richardson S.

Bioinformatics. 2006 Apr 15;22(8):911-8. Epub 2006 Feb 2.

PMID:
16455750
13.

DNAlive: a tool for the physical analysis of DNA at the genomic scale.

Goñi JR, Fenollosa C, Pérez A, Torrents D, Orozco M.

Bioinformatics. 2008 Aug 1;24(15):1731-2. doi: 10.1093/bioinformatics/btn259. Epub 2008 Jun 9.

PMID:
18544548
14.

TRAMP: a software package for generating transposon maps.

Veklerov E, Martin CH, Theil EH.

Comput Appl Biosci. 1995 Apr;11(2):173-9.

PMID:
7620990
15.
16.

GenoMiner: a tool for genome-wide search of coding and non-coding conserved sequence tags.

Castrignanò T, De Meo PD, Grillo G, Liuni S, Mignone F, Talamo IG, Pesole G.

Bioinformatics. 2006 Feb 15;22(4):497-9. Epub 2005 Nov 2.

PMID:
16267081
17.

Ridom TraceEdit: a DNA trace editor and viewer.

Rothgänger J, Weniger M, Weniger T, Mellmann A, Harmsen D.

Bioinformatics. 2006 Feb 15;22(4):493-4. Epub 2005 Dec 15.

PMID:
16357036
18.

SNP-PHAGE--High throughput SNP discovery pipeline.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Oct 23;7:468.

19.
20.

Thermodynamic properties of DNA sequences: characteristic values for the human genome.

Koehler RT, Peyret N.

Bioinformatics. 2005 Aug 15;21(16):3333-9. Epub 2005 Jun 9.

PMID:
15947020

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