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Items: 1 to 20 of 2065

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Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.

Ray SS, Bandyopadhyay S, Pal SK.

IEEE Trans Biomed Eng. 2009 Feb;56(2):229-36. doi: 10.1109/TBME.2008.2005955. Epub 2008 Sep 30.

PMID:
19272921
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Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO).

Dwight SS, Harris MA, Dolinski K, Ball CA, Binkley G, Christie KR, Fisk DG, Issel-Tarver L, Schroeder M, Sherlock G, Sethuraman A, Weng S, Botstein D, Cherry JM.

Nucleic Acids Res. 2002 Jan 1;30(1):69-72.

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Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. doi: 10.1186/1471-2180-9-S1-S8. Review.

8.

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.

Nabieva E, Jim K, Agarwal A, Chazelle B, Singh M.

Bioinformatics. 2005 Jun;21 Suppl 1:i302-10.

PMID:
15961472
9.

Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities.

Zhu M, Gao L, Guo Z, Li Y, Wang D, Wang J, Wang C.

Gene. 2007 Apr 15;391(1-2):113-9. Epub 2006 Dec 22.

PMID:
17289301
10.

Utilizing shared interacting domain patterns and Gene Ontology information to improve protein-protein interaction prediction.

Roslan R, Othman RM, Shah ZA, Kasim S, Asmuni H, Taliba J, Hassan R, Zakaria Z.

Comput Biol Med. 2010 Jun;40(6):555-64. doi: 10.1016/j.compbiomed.2010.03.009. Epub 2010 Apr 24.

PMID:
20417930
11.

PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data.

Hawkins T, Chitale M, Luban S, Kihara D.

Proteins. 2009 Feb 15;74(3):566-82. doi: 10.1002/prot.22172.

PMID:
18655063
12.

The Cartographers toolbox: building bigger and better human protein interaction networks.

Sanderson CM.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):1-11. doi: 10.1093/bfgp/elp003. Epub 2009 Mar 12. Review.

PMID:
19282470
13.

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.

14.

Hierarchical multi-label prediction of gene function.

Barutcuoglu Z, Schapire RE, Troyanskaya OG.

Bioinformatics. 2006 Apr 1;22(7):830-6. Epub 2006 Jan 12.

PMID:
16410319
15.

Predicting gene ontology functions from protein's regional surface structures.

Liu ZP, Wu LY, Wang Y, Chen L, Zhang XS.

BMC Bioinformatics. 2007 Dec 11;8:475.

16.

Assessment of protein set coherence using functional annotations.

Chagoyen M, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2008 Oct 20;9:444. doi: 10.1186/1471-2105-9-444.

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Pushing structural information into the yeast interactome by high-throughput protein docking experiments.

Mosca R, Pons C, Fernández-Recio J, Aloy P.

PLoS Comput Biol. 2009 Aug;5(8):e1000490. doi: 10.1371/journal.pcbi.1000490. Epub 2009 Aug 28.

19.

A lock-and-key model for protein-protein interactions.

Morrison JL, Breitling R, Higham DJ, Gilbert DR.

Bioinformatics. 2006 Aug 15;22(16):2012-9. Epub 2006 Jun 20.

PMID:
16787977
20.

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