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Items: 1 to 20 of 118

1.

Relations in biomedical ontologies.

Smith B, Ceusters W, Klagges B, Köhler J, Kumar A, Lomax J, Mungall C, Neuhaus F, Rector AL, Rosse C.

Genome Biol. 2005;6(5):R46. Epub 2005 Apr 28.

2.

Architectural approach for providing relations in biomedical terminologies and ontologies.

Brochhausen M, Blobel B.

Stud Health Technol Inform. 2011;169:739-43.

PMID:
21893845
3.

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Masci AM, Arighi CN, Diehl AD, Lieberman AE, Mungall C, Scheuermann RH, Smith B, Cowell LG.

BMC Bioinformatics. 2009 Feb 25;10:70. doi: 10.1186/1471-2105-10-70.

4.

A formal theory for spatial representation and reasoning in biomedical ontologies.

Donnelly M, Bittner T, Rosse C.

Artif Intell Med. 2006 Jan;36(1):1-27. Epub 2005 Oct 24.

PMID:
16249077
5.

Desiderata for domain reference ontologies in biomedicine.

Burgun A.

J Biomed Inform. 2006 Jun;39(3):307-13. Epub 2005 Oct 17.

6.

Biomedical ontologies: what part-of is and isn't.

Schulz S, Kumar A, Bittner T.

J Biomed Inform. 2006 Jun;39(3):350-61. Epub 2005 Dec 19.

7.

Relations as patterns: bridging the gap between OBO and OWL.

Hoehndorf R, Oellrich A, Dumontier M, Kelso J, Rebholz-Schuhmann D, Herre H.

BMC Bioinformatics. 2010 Aug 31;11:441. doi: 10.1186/1471-2105-11-441.

8.
9.

The ontology of biological sequences.

Hoehndorf R, Kelso J, Herre H.

BMC Bioinformatics. 2009 Nov 18;10:377. doi: 10.1186/1471-2105-10-377.

10.

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning.

Hoehndorf R, Dumontier M, Oellrich A, Rebholz-Schuhmann D, Schofield PN, Gkoutos GV.

PLoS One. 2011;6(7):e22006. doi: 10.1371/journal.pone.0022006. Epub 2011 Jul 18.

11.

The role of foundational relations in the alignment of biomedical ontologies.

Smith B, Rosse C.

Stud Health Technol Inform. 2004;107(Pt 1):444-8.

PMID:
15360852
12.

Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies.

Cook DL, Mejino JL, Neal ML, Gennari JH.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:2791-4. doi: 10.1109/IEMBS.2009.5333830.

13.

Ontologies as integrative tools for plant science.

Walls RL, Athreya B, Cooper L, Elser J, Gandolfo MA, Jaiswal P, Mungall CJ, Preece J, Rensing S, Smith B, Stevenson DW.

Am J Bot. 2012 Aug;99(8):1263-75. doi: 10.3732/ajb.1200222. Epub 2012 Jul 30.

14.

A unified framework for biomedical terminologies and ontologies.

Ceusters W, Smith B.

Stud Health Technol Inform. 2010;160(Pt 2):1050-4.

15.

Ontologies in quantitative biology: a basis for comparison, integration, and discovery.

Jensen LJ, Bork P.

PLoS Biol. 2010 May 25;8(5):e1000374. doi: 10.1371/journal.pbio.1000374. No abstract available.

16.

The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME.

Neuroinformatics. 2008 Sep;6(3):175-94. doi: 10.1007/s12021-008-9032-z. Epub 2008 Oct 31.

17.

The qualitative and time-dependent character of spatial relations in biomedical ontologies.

Bittner T, Goldberg LJ.

Bioinformatics. 2007 Jul 1;23(13):1674-82. Epub 2007 Apr 26.

PMID:
17463018
18.

Logical properties of foundational relations in bio-ontologies.

Bittner T, Donnelly M.

Artif Intell Med. 2007 Mar;39(3):197-216. Epub 2007 Apr 10.

PMID:
17428644
19.

Biomedical ontologies: a functional perspective.

Rubin DL, Shah NH, Noy NF.

Brief Bioinform. 2008 Jan;9(1):75-90. Epub 2007 Dec 12. Review.

PMID:
18077472
20.

Bridging biological ontologies and biosimulation: the ontology of physics for biology.

Cook DL, Mejino JL, Neal ML, Gennari JH.

AMIA Annu Symp Proc. 2008 Nov 6:136-40.

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