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Items: 1 to 20 of 194


PMUT: a web-based tool for the annotation of pathological mutations on proteins.

Ferrer-Costa C, Gelpí JL, Zamakola L, Parraga I, de la Cruz X, Orozco M.

Bioinformatics. 2005 Jul 15;21(14):3176-8. Epub 2005 May 6.


Dasty and UniProt DAS: a perfect pair for protein feature visualization.

Jones P, Vinod N, Down T, Hackmann A, Kahari A, Kretschmann E, Quinn A, Wieser D, Hermjakob H, Apweiler R.

Bioinformatics. 2005 Jul 15;21(14):3198-9. Epub 2005 May 19.


Parmodel: a web server for automated comparative modeling of proteins.

Uchôa HB, Jorge GE, Freitas Da Silveira NJ, Camera JC Jr, Canduri F, De Azevedo WF Jr.

Biochem Biophys Res Commun. 2004 Dec 24;325(4):1481-6.


FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded.

Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, Beckmann JS, Silman I, Sussman JL.

Bioinformatics. 2005 Aug 15;21(16):3435-8. Epub 2005 Jun 14.


HCPM--program for hierarchical clustering of protein models.

Gront D, Kolinski A.

Bioinformatics. 2005 Jul 15;21(14):3179-80. Epub 2005 Apr 19.


The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling.

Arnold K, Bordoli L, Kopp J, Schwede T.

Bioinformatics. 2006 Jan 15;22(2):195-201. Epub 2005 Nov 13.


Multiple Alignment of protein structures and sequences for VMD.

Eargle J, Wright D, Luthey-Schulten Z.

Bioinformatics. 2006 Feb 15;22(4):504-6. Epub 2005 Dec 8.


TMDET: web server for detecting transmembrane regions of proteins by using their 3D coordinates.

Tusnády GE, Dosztányi Z, Simon I.

Bioinformatics. 2005 Apr 1;21(7):1276-7. Epub 2004 Nov 11.


IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content.

Dosztányi Z, Csizmok V, Tompa P, Simon I.

Bioinformatics. 2005 Aug 15;21(16):3433-4. Epub 2005 Jun 14.


A web-based three-dimensional protein retrieval system by matching visual similarity.

Yeh JS, Chen DY, Chen BY, Ouhyoung M.

Bioinformatics. 2005 Jul 1;21(13):3056-7. Epub 2005 Apr 19.


PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics.

von Grotthuss M, Plewczynski D, Ginalski K, Rychlewski L, Shakhnovich EI.

BMC Bioinformatics. 2006 Feb 6;7:53.


PTGL--a web-based database application for protein topologies.

May P, Barthel S, Koch I.

Bioinformatics. 2004 Nov 22;20(17):3277-9. Epub 2004 Jun 24.


Meta-DP: domain prediction meta-server.

Saini HK, Fischer D.

Bioinformatics. 2005 Jun 15;21(12):2917-20. Epub 2005 Apr 19.


MAGOS: multiple alignment and modelling server.

Garnier N, Friedrich A, Bolze R, Bettler E, Moulinier L, Geourjon C, Thompson JD, Deléage G, Poch O.

Bioinformatics. 2006 Sep 1;22(17):2164-5. Epub 2006 Jul 4.


LOC3D: annotate sub-cellular localization for protein structures.

Nair R, Rost B.

Nucleic Acids Res. 2003 Jul 1;31(13):3337-40.


A neural-network-based method for predicting protein stability changes upon single point mutations.

Capriotti E, Fariselli P, Casadio R.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i63-8.


On distance and similarity in fold space.

Sippl MJ.

Bioinformatics. 2008 Mar 15;24(6):872-3. doi: 10.1093/bioinformatics/btn040. Epub 2008 Jan 28.


Predicting protein secondary structure by cascade-correlation neural networks.

Wood MJ, Hirst JD.

Bioinformatics. 2004 Feb 12;20(3):419-20. Epub 2004 Jan 22.

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