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Items: 1 to 20 of 148

1.

Genome-wide assembly and analysis of alternative transcripts in mouse.

Sharov AA, Dudekula DB, Ko MS.

Genome Res. 2005 May;15(5):748-54.

3.

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

BMC Genomics. 2006 Dec 27;7:325.

4.

Characterization of 954 bovine full-CDS cDNA sequences.

Harhay GP, Sonstegard TS, Keele JW, Heaton MP, Clawson ML, Snelling WM, Wiedmann RT, Van Tassell CP, Smith TP.

BMC Genomics. 2005 Nov 23;6:166.

5.

ASmodeler: gene modeling of alternative splicing from genomic alignment of mRNA, EST and protein sequences.

Kim N, Shin S, Lee S.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W181-6.

6.

Genome-wide detection of alternative splicing in expressed sequences of human genes.

Modrek B, Resch A, Grasso C, Lee C.

Nucleic Acids Res. 2001 Jul 1;29(13):2850-9.

7.

Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.

Cusack BP, Wolfe KH.

Mol Biol Evol. 2005 Nov;22(11):2198-208. Epub 2005 Jul 27.

PMID:
16049198
8.

Bioinformatics analysis of alternative splicing.

Lee C, Wang Q.

Brief Bioinform. 2005 Mar;6(1):23-33. Review.

PMID:
15826354
9.

Features of Arabidopsis genes and genome discovered using full-length cDNAs.

Alexandrov NN, Troukhan ME, Brover VV, Tatarinova T, Flavell RB, Feldmann KA.

Plant Mol Biol. 2006 Jan;60(1):69-85.

PMID:
16463100
10.

The mouse and rat MAP1B genes: genomic organization and alternative transcription.

Kutschera W, Zauner W, Wiche G, Propst F.

Genomics. 1998 May 1;49(3):430-6.

PMID:
9615228
11.

ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets.

Foissac S, Sammeth M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W297-9. Epub 2007 May 7.

12.

Detection and analysis of alternative splicing in the silkworm by aligning expressed sequence tags with the genomic sequence.

Zha XF, Xia QY, Zhao P, Li J, Duan J, Wang ZL, Qian JF, Xiang ZH.

Insect Mol Biol. 2005 Apr;14(2):113-9.

PMID:
15796744
13.

Diversification of stem cell molecular repertoire by alternative splicing.

Pritsker M, Doniger TT, Kramer LC, Westcot SE, Lemischka IR.

Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14290-5. Epub 2005 Sep 23.

14.
15.

LongSAGE analysis significantly improves genome annotation: identifications of novel genes and alternative transcripts in the mouse.

Wahl MB, Heinzmann U, Imai K.

Bioinformatics. 2005 Apr 15;21(8):1393-400. Epub 2004 Dec 10.

PMID:
15591356
16.

Large-scale identification and characterization of alternative splicing variants of human gene transcripts using 56,419 completely sequenced and manually annotated full-length cDNAs.

Takeda J, Suzuki Y, Nakao M, Barrero RA, Koyanagi KO, Jin L, Motono C, Hata H, Isogai T, Nagai K, Otsuki T, Kuryshev V, Shionyu M, Yura K, Go M, Thierry-Mieg J, Thierry-Mieg D, Wiemann S, Nomura N, Sugano S, Gojobori T, Imanishi T.

Nucleic Acids Res. 2006;34(14):3917-28. Epub 2006 Aug 12.

17.

Comparative analysis of sequence features involved in the recognition of tandem splice sites.

Bortfeldt R, Schindler S, Szafranski K, Schuster S, Holste D.

BMC Genomics. 2008 Apr 30;9:202. doi: 10.1186/1471-2164-9-202.

18.

ECgene: genome annotation for alternative splicing.

Kim P, Kim N, Lee Y, Kim B, Shin Y, Lee S.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D75-9.

19.

RASE: recognition of alternatively spliced exons in C.elegans.

Rätsch G, Sonnenburg S, Schölkopf B.

Bioinformatics. 2005 Jun;21 Suppl 1:i369-77.

PMID:
15961480
20.

Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs.

Frey BJ, Mohammad N, Morris QD, Zhang W, Robinson MD, Mnaimneh S, Chang R, Pan Q, Sat E, Rossant J, Bruneau BG, Aubin JE, Blencowe BJ, Hughes TR.

Nat Genet. 2005 Sep;37(9):991-6. Epub 2005 Aug 28.

PMID:
16127451

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