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Items: 1 to 20 of 127

1.

Independence and reproducibility across microarray platforms.

Larkin JE, Frank BC, Gavras H, Sultana R, Quackenbush J.

Nat Methods. 2005 May;2(5):337-44. Epub 2005 Apr 21.

2.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

3.

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89. Epub 2005 Oct 25.

PMID:
16253343
4.

Cross platform microarray analysis for robust identification of differentially expressed genes.

Bosotti R, Locatelli G, Healy S, Scacheri E, Sartori L, Mercurio C, Calogero R, Isacchi A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S5.

5.

Universal external RNA controls for microbial gene expression analysis using microarray and qRT-PCR.

Liu ZL, Slininger PJ.

J Microbiol Methods. 2007 Mar;68(3):486-96. Epub 2006 Dec 14.

PMID:
17173990
6.

Current issues for DNA microarrays: platform comparison, double linear amplification, and universal RNA reference.

Park PJ, Cao YA, Lee SY, Kim JW, Chang MS, Hart R, Choi S.

J Biotechnol. 2004 Sep 9;112(3):225-45.

PMID:
15313001
7.

Can subtle changes in gene expression be consistently detected with different microarray platforms?

Pedotti P, 't Hoen PA, Vreugdenhil E, Schenk GJ, Vossen RH, Ariyurek Y, de Hollander M, Kuiper R, van Ommen GJ, den Dunnen JT, Boer JM, de Menezes RX.

BMC Genomics. 2008 Mar 10;9:124. doi: 10.1186/1471-2164-9-124.

8.

Quantitative PCR deconstruction of discrepancies between results reported by different hybridization platforms.

Goodsaid FM, Smith RJ, Rosenblum IY.

Environ Health Perspect. 2004 Mar;112(4):456-60.

9.

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

BMC Bioinformatics. 2007 Oct 25;8:412.

11.

Dissecting tBHQ induced ARE-driven gene expression through long and short oligonucleotide arrays.

Li J, Spletter ML, Johnson JA.

Physiol Genomics. 2005 Mar 21;21(1):43-58. Epub 2004 Dec 21.

12.

"Per cell" normalization method for mRNA measurement by quantitative PCR and microarrays.

Kanno J, Aisaki K, Igarashi K, Nakatsu N, Ono A, Kodama Y, Nagao T.

BMC Genomics. 2006 Mar 29;7:64.

13.

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies.

Kuo WP, Liu F, Trimarchi J, Punzo C, Lombardi M, Sarang J, Whipple ME, Maysuria M, Serikawa K, Lee SY, McCrann D, Kang J, Shearstone JR, Burke J, Park DJ, Wang X, Rector TL, Ricciardi-Castagnoli P, Perrin S, Choi S, Bumgarner R, Kim JH, Short GF 3rd, Freeman MW, Seed B, Jensen R, Church GM, Hovig E, Cepko CL, Park P, Ohno-Machado L, Jenssen TK.

Nat Biotechnol. 2006 Jul;24(7):832-40. Epub 2006 Jul 2.

PMID:
16823376
14.

Oligonucleotide microarray analysis of human lens epithelial cells: TGFbeta regulated gene expression.

Dawes LJ, Elliott RM, Reddan JR, Wormstone YM, Wormstone IM.

Mol Vis. 2007 Jul 17;13:1181-97.

PMID:
17679943
15.

A rapid method for microarray cross platform comparisons using gene expression signatures.

Cheadle C, Becker KG, Cho-Chung YS, Nesterova M, Watkins T, Wood W 3rd, Prabhu V, Barnes KC.

Mol Cell Probes. 2007 Feb;21(1):35-46. Epub 2006 Aug 10.

PMID:
16982174
16.

Gene expression profile of mouse prostate tumors reveals dysregulations in major biological processes and identifies potential murine targets for preclinical development of human prostate cancer therapy.

Haram KM, Peltier HJ, Lu B, Bhasin M, Otu HH, Choy B, Regan M, Libermann TA, Latham GJ, Sanda MG, Arredouani MS.

Prostate. 2008 Oct 1;68(14):1517-30. doi: 10.1002/pros.20803.

PMID:
18668517
17.

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.

Barnes M, Freudenberg J, Thompson S, Aronow B, Pavlidis P.

Nucleic Acids Res. 2005 Oct 19;33(18):5914-23. Print 2005.

18.

Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.

Holloway AJ, Oshlack A, Diyagama DS, Bowtell DD, Smyth GK.

BMC Bioinformatics. 2006 Nov 22;7:511.

19.

Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements.

Mieczkowski J, Tyburczy ME, Dabrowski M, Pokarowski P.

BMC Bioinformatics. 2010 Feb 24;11:104. doi: 10.1186/1471-2105-11-104.

20.

The chemiluminescence based Ziplex automated workstation focus array reproduces ovarian cancer Affymetrix GeneChip expression profiles.

Quinn MC, Wilson DJ, Young F, Dempsey AA, Arcand SL, Birch AH, Wojnarowicz PM, Provencher D, Mes-Masson AM, Englert D, Tonin PN.

J Transl Med. 2009 Jul 6;7:55. doi: 10.1186/1479-5876-7-55.

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