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Items: 1 to 20 of 87

1.
2.

Data standards and controlled vocabularies for proteomics.

Martens L, Palazzi LM, Hermjakob H.

Methods Mol Biol. 2008;484:279-86. doi: 10.1007/978-1-59745-398-1_18.

PMID:
18592186
3.

Proteomic data exchange and storage: the need for common standards and public repositories.

Orchard S, Jones P, Taylor C, Zhu W, Julian RK Jr, Hermjakob H, Apweiler R.

Methods Mol Biol. 2007;367:261-70.

PMID:
17185781
4.

Further steps towards data standardisation: the Proteomic Standards Initiative HUPO 3(rd) annual congress, Beijing 25-27(th) October, 2004.

Orchard S, Hermjakob H, Binz PA, Hoogland C, Taylor CF, Zhu W, Julian RK Jr, Apweiler R.

Proteomics. 2005 Feb;5(2):337-9.

PMID:
15700244
5.

Current status of proteomic standards development.

Orchard S, Taylor C, Hermjakob H, Zhu W, Julian R, Apweiler R.

Expert Rev Proteomics. 2004 Aug;1(2):179-83. Review.

PMID:
15966812
6.

Development of data representation standards by the human proteome organization proteomics standards initiative.

Deutsch EW, Albar JP, Binz PA, Eisenacher M, Jones AR, Mayer G, Omenn GS, Orchard S, Vizcaíno JA, Hermjakob H.

J Am Med Inform Assoc. 2015 May;22(3):495-506. doi: 10.1093/jamia/ocv001. Epub 2015 Feb 28. Review.

7.

Recent developments in proteome informatics for mass spectrometry analysis.

Wright JC, Hubbard SJ.

Comb Chem High Throughput Screen. 2009 Feb;12(2):194-202. Review.

PMID:
19199887
8.

Controlled vocabularies and ontologies in proteomics: overview, principles and practice.

Mayer G, Jones AR, Binz PA, Deutsch EW, Orchard S, Montecchi-Palazzi L, Vizcaíno JA, Hermjakob H, Oveillero D, Julian R, Stephan C, Meyer HE, Eisenacher M.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):98-107. doi: 10.1016/j.bbapap.2013.02.017. Epub 2013 Feb 19. Review.

9.

Controlled vocabularies for microbial virulence factors.

Korves T, Colosimo ME.

Trends Microbiol. 2009 Jul;17(7):279-85. doi: 10.1016/j.tim.2009.04.002. Epub 2009 Jul 2. Review.

PMID:
19577471
10.

Annual spring meeting of the Proteomics Standards Initiative 23-25 April 2008, Toledo, Spain.

Orchard S, Albar JP, Deutsch EW, Binz PA, Jones AR, Creasy D, Hermjakob H.

Proteomics. 2008 Oct;8(20):4168-72. doi: 10.1002/pmic.200800555.

PMID:
18814335
11.

The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary.

Mayer G, Montecchi-Palazzi L, Ovelleiro D, Jones AR, Binz PA, Deutsch EW, Chambers M, Kallhardt M, Levander F, Shofstahl J, Orchard S, Vizcaíno JA, Hermjakob H, Stephan C, Meyer HE, Eisenacher M; HUPO-PSI Group.

Database (Oxford). 2013 Mar 12;2013:bat009. doi: 10.1093/database/bat009. Print 2013.

12.

Autumn 2005 Workshop of the Human Proteome Organisation Proteomics Standards Initiative (HUPO-PSI) Geneva, September, 4-6, 2005.

Orchard S, Hermjakob H, Taylor C, Binz PA, Hoogland C, Julian R, Garavelli JS, Aebersold R, Apweiler R.

Proteomics. 2006 Feb;6(3):738-41.

PMID:
16411267
13.

Semantic similarity analysis of protein data: assessment with biological features and issues.

Guzzi PH, Mina M, Guerra C, Cannataro M.

Brief Bioinform. 2012 Sep;13(5):569-85. doi: 10.1093/bib/bbr066. Epub 2011 Dec 2.

PMID:
22138322
14.

From proteome lists to biological impact--tools and strategies for the analysis of large MS data sets.

Malik R, Dulla K, Nigg EA, Körner R.

Proteomics. 2010 Mar;10(6):1270-83. doi: 10.1002/pmic.200900365. Review.

PMID:
20077408
15.

Using ontologies in PROTEUS for modeling proteomics data mining applications.

Cannataro M, Guzzi PH, Mazza T, Tradigo G, Veltri P.

Stud Health Technol Inform. 2005;112:17-26.

PMID:
15923712
16.

[Knowledge-based technologies in proteomics].

Ponomarenko EA, Il'gisonis EV, Lisitsa AV.

Bioorg Khim. 2011 Mar-Apr;37(2):190-8. Review. Russian.

PMID:
21721252
17.

An update on data standards for gel electrophoresis.

Jones AR, Gibson F.

Proteomics. 2007 Sep;7 Suppl 1:35-40.

PMID:
17893862
18.

Molecular interaction databases.

Orchard S.

Proteomics. 2012 May;12(10):1656-62. doi: 10.1002/pmic.201100484. Review.

PMID:
22611057
19.

The HUPO proteomics standards initiative--easing communication and minimizing data loss in a changing world.

Orchard S, Hermjakob H.

Brief Bioinform. 2008 Mar;9(2):166-73. Epub 2007 Dec 7.

PMID:
18065433
20.

Publishing large proteome datasets: scientific policy meets emerging technologies.

Hancock WS, Wu SL, Stanley RR, Gombocz EA.

Trends Biotechnol. 2002 Dec;20(12 Suppl):S39-44. Review.

PMID:
12570159

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