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Items: 1 to 20 of 45

1.

Ontology driven dynamic linking of biology resources.

Bechhofer SK, Stevens RD, Lord PW.

Pac Symp Biocomput. 2005:79-90.

2.

OLS dialog: an open-source front end to the ontology lookup service.

Barsnes H, Côté RG, Eidhammer I, Martens L.

BMC Bioinformatics. 2010 Jan 17;11:34. doi: 10.1186/1471-2105-11-34.

3.

OILing the way to machine understandable bioinformatics resources.

Stevens R, Goble C, Horrocks I, Bechhofer S.

IEEE Trans Inf Technol Biomed. 2002 Jun;6(2):129-34.

PMID:
12075667
4.

OnEX: Exploring changes in life science ontologies.

Hartung M, Kirsten T, Gross A, Rahm E.

BMC Bioinformatics. 2009 Aug 13;10:250. doi: 10.1186/1471-2105-10-250.

5.

Creating the gene ontology resource: design and implementation.

Gene Ontology Consortium.

Genome Res. 2001 Aug;11(8):1425-33.

6.

Ontology-based knowledge representation for bioinformatics.

Stevens R, Goble CA, Bechhofer S.

Brief Bioinform. 2000 Nov;1(4):398-414. Review.

PMID:
11465057
7.

Modeling sample variables with an Experimental Factor Ontology.

Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H.

Bioinformatics. 2010 Apr 15;26(8):1112-8. doi: 10.1093/bioinformatics/btq099. Epub 2010 Mar 3.

8.

A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.

Fox JA, McMillan S, Ouellette BF.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W3-5.

9.

Comparison of concept recognizers for building the Open Biomedical Annotator.

Shah NH, Bhatia N, Jonquet C, Rubin D, Chiang AP, Musen MA.

BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S14. doi: 10.1186/1471-2105-10-S9-S14.

10.

Moby and Moby 2: creatures of the deep (web).

Vandervalk BP, McCarthy EL, Wilkinson MD.

Brief Bioinform. 2009 Mar;10(2):114-28. doi: 10.1093/bib/bbn051. Epub 2009 Jan 16.

PMID:
19151099
11.

Methods for gene ontology annotation.

Dimmer E, Berardini TZ, Barrell D, Camon E.

Methods Mol Biol. 2007;406:495-520.

PMID:
18287709
12.

Building a bioinformatics ontology using OIL.

Stevens R, Goble C, Horrocks I, Bechhofer S.

IEEE Trans Inf Technol Biomed. 2002 Jun;6(2):135-41.

PMID:
12075668
13.
14.

Functional abstraction as a method to discover knowledge in gene ontologies.

Ultsch A, Lötsch J.

PLoS One. 2014 Feb 25;9(2):e90191. doi: 10.1371/journal.pone.0090191. eCollection 2014.

15.

Developing an ontology.

Harris MA.

Methods Mol Biol. 2008;452:111-24. doi: 10.1007/978-1-60327-159-2_5. Review.

PMID:
18563371
16.

The ontology of biological sequences.

Hoehndorf R, Kelso J, Herre H.

BMC Bioinformatics. 2009 Nov 18;10:377. doi: 10.1186/1471-2105-10-377.

17.

Dynamic sub-ontology evolution for traditional Chinese medicine web ontology.

Mao Y, Wu Z, Tian W, Jiang X, Cheung WK.

J Biomed Inform. 2008 Oct;41(5):790-805. doi: 10.1016/j.jbi.2008.05.008. Epub 2008 May 23.

18.

Toxicology ontology perspectives.

Hardy B, Apic G, Carthew P, Clark D, Cook D, Dix I, Escher S, Hastings J, Heard DJ, Jeliazkova N, Judson P, Matis-Mitchell S, Mitic D, Myatt G, Shah I, Spjuth O, Tcheremenskaia O, Toldo L, Watson D, White A, Yang C.

ALTEX. 2012;29(2):139-56. Review.

PMID:
22562487
19.

Evolution in bioinformatic resources: 2009 update on the Bioinformatics Links Directory.

Brazas MD, Yamada JT, Ouellette BF.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W3-5. doi: 10.1093/nar/gkp531. Epub 2009 Jun 15.

20.

Bio2RDF: towards a mashup to build bioinformatics knowledge systems.

Belleau F, Nolin MA, Tourigny N, Rigault P, Morissette J.

J Biomed Inform. 2008 Oct;41(5):706-16. doi: 10.1016/j.jbi.2008.03.004. Epub 2008 Mar 21.

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