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Items: 1 to 20 of 297

1.

wFleaBase: the Daphnia genome database.

Colbourne JK, Singan VR, Gilbert DG.

BMC Bioinformatics. 2005 Mar 7;6:45.

2.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

3.

The ecoresponsive genome of Daphnia pulex.

Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S, Aerts A, Arnold GJ, Basu MK, Bauer DJ, Cáceres CE, Carmel L, Casola C, Choi JH, Detter JC, Dong Q, Dusheyko S, Eads BD, Fröhlich T, Geiler-Samerotte KA, Gerlach D, Hatcher P, Jogdeo S, Krijgsveld J, Kriventseva EV, Kültz D, Laforsch C, Lindquist E, Lopez J, Manak JR, Muller J, Pangilinan J, Patwardhan RP, Pitluck S, Pritham EJ, Rechtsteiner A, Rho M, Rogozin IB, Sakarya O, Salamov A, Schaack S, Shapiro H, Shiga Y, Skalitzky C, Smith Z, Souvorov A, Sung W, Tang Z, Tsuchiya D, Tu H, Vos H, Wang M, Wolf YI, Yamagata H, Yamada T, Ye Y, Shaw JR, Andrews J, Crease TJ, Tang H, Lucas SM, Robertson HM, Bork P, Koonin EV, Zdobnov EM, Grigoriev IV, Lynch M, Boore JL.

Science. 2011 Feb 4;331(6017):555-61. doi: 10.1126/science.1197761.

4.

Genomics in the ecological arena.

Orsini L, Decaestecker E, De Meester L, Pfrender ME, Colbourne JK.

Biol Lett. 2011 Feb 23;7(1):2-3. doi: 10.1098/rsbl.2010.0629.

5.

An integrated Korean biodiversity and genetic information retrieval system.

Lim J, Bhak J, Oh HM, Kim CB, Park YH, Paek WK.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S24. doi: 10.1186/1471-2105-9-S12-S24.

6.

WildSilkbase: an EST database of wild silkmoths.

Arunkumar KP, Tomar A, Daimon T, Shimada T, Nagaraju J.

BMC Genomics. 2008 Jul 17;9:338. doi: 10.1186/1471-2164-9-338.

7.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

8.

Genomic pathways database and biological data management.

Ozsoyoglu ZM, Ozsoyoglu G, Nadeau J.

Anim Genet. 2006 Aug;37 Suppl 1:41-7.

PMID:
16887001
9.

BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum.

Kim HS, Murphy T, Xia J, Caragea D, Park Y, Beeman RW, Lorenzen MD, Butcher S, Manak JR, Brown SJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D437-42. doi: 10.1093/nar/gkp807.

10.

The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group..

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7.

11.

Linking genes to communities and ecosystems: Daphnia as an ecogenomic model.

Miner BE, De Meester L, Pfrender ME, Lampert W, Hairston NG Jr.

Proc Biol Sci. 2012 May 22;279(1735):1873-82. doi: 10.1098/rspb.2011.2404.

12.

The KEGG resource for deciphering the genome.

Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D277-80.

13.

Gramene, a tool for grass genomics.

Ware DH, Jaiswal P, Ni J, Yap IV, Pan X, Clark KY, Teytelman L, Schmidt SC, Zhao W, Chang K, Cartinhour S, Stein LD, McCouch SR.

Plant Physiol. 2002 Dec;130(4):1606-13. Review.

14.

DDBJ launches a new archive database with analytical tools for next-generation sequence data.

Kaminuma E, Mashima J, Kodama Y, Gojobori T, Ogasawara O, Okubo K, Takagi T, Nakamura Y.

Nucleic Acids Res. 2010 Jan;38(Database issue):D33-8. doi: 10.1093/nar/gkp847.

15.

Development of bioinformatics resources for display and analysis of copy number and other structural variants in the human genome.

Zhang J, Feuk L, Duggan GE, Khaja R, Scherer SW.

Cytogenet Genome Res. 2006;115(3-4):205-14. Review.

PMID:
17124402
16.

PLATCOM: a Platform for Computational Comparative Genomics.

Choi K, Ma Y, Choi JH, Kim S.

Bioinformatics. 2005 May 15;21(10):2514-6.

PMID:
15731206
17.

Functional and structural genomics using PEDANT.

Frishman D, Albermann K, Hani J, Heumann K, Metanomski A, Zollner A, Mewes HW.

Bioinformatics. 2001 Jan;17(1):44-57.

PMID:
11222261
18.

ZooDDD: a cross-species database for digital differential display analysis.

Chen YC, Hsiao CD, Lin WD, Hu CM, Hwang PP, Ho JM.

Bioinformatics. 2006 Sep 1;22(17):2180-2.

PMID:
16820423
19.

The UCSC Genome Browser Database.

Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ; University of California Santa Cruz..

Nucleic Acids Res. 2003 Jan 1;31(1):51-4.

20.

Functional inference by ProtoNet family tree: the uncharacterized proteome of Daphnia pulex.

Rappoport N, Linial M.

BMC Bioinformatics. 2013;14 Suppl 3:S11. doi: 10.1186/1471-2105-14-S3-S11.

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