Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 70

1.

Percolation of annotation errors through hierarchically structured protein sequence databases.

Gilks WR, Audit B, de Angelis D, Tsoka S, Ouzounis CA.

Math Biosci. 2005 Feb;193(2):223-34.

PMID:
15748731
2.

Modeling the percolation of annotation errors in a database of protein sequences.

Gilks WR, Audit B, De Angelis D, Tsoka S, Ouzounis CA.

Bioinformatics. 2002 Dec;18(12):1641-9.

PMID:
12490449
3.

ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.

4.

Genome sequencing and annotation: an overview.

Kuroda M, Hiramatsu K.

Methods Mol Biol. 2004;266:29-45.

PMID:
15148414
5.

Protein functional annotation by homology.

Mazumder R, Vasudevan S, Nikolskaya AN.

Methods Mol Biol. 2008;484:465-90. doi: 10.1007/978-1-59745-398-1_28.

PMID:
18592196
6.

Automatic annotation of protein function.

Valencia A.

Curr Opin Struct Biol. 2005 Jun;15(3):267-74. Review.

PMID:
15922590
7.

Evaluation of annotation strategies using an entire genome sequence.

Iliopoulos I, Tsoka S, Andrade MA, Enright AJ, Carroll M, Poullet P, Promponas V, Liakopoulos T, Palaios G, Pasquier C, Hamodrakas S, Tamames J, Yagnik AT, Tramontano A, Devos D, Blaschke C, Valencia A, Brett D, Martin D, Leroy C, Rigoutsos I, Sander C, Ouzounis CA.

Bioinformatics. 2003 Apr 12;19(6):717-26.

PMID:
12691983
8.

A database of unique protein sequence identifiers for proteome studies.

Babnigg G, Giometti CS.

Proteomics. 2006 Aug;6(16):4514-22.

PMID:
16858731
10.

Automated annotation of microbial proteomes in SWISS-PROT.

Gattiker A, Michoud K, Rivoire C, Auchincloss AH, Coudert E, Lima T, Kersey P, Pagni M, Sigrist CJ, Lachaize C, Veuthey AL, Gasteiger E, Bairoch A.

Comput Biol Chem. 2003 Feb;27(1):49-58.

PMID:
12798039
11.

The challenge of annotating protein sequences: The tale of eight domains of unknown function in Pfam.

Goonesekere NC, Shipely K, O'Connor K.

Comput Biol Chem. 2010 Jun;34(3):210-4. doi: 10.1016/j.compbiolchem.2010.04.001. Epub 2010 May 26.

PMID:
20537955
12.

ProtRepeatsDB: a database of amino acid repeats in genomes.

Kalita MK, Ramasamy G, Duraisamy S, Chauhan VS, Gupta D.

BMC Bioinformatics. 2006 Jul 7;7:336.

13.

Annotation of parasite genomes.

Berriman M, Harris M.

Methods Mol Biol. 2004;270:17-44.

PMID:
15153621
14.

Curation of viral genomes: challenges, applications and the way forward.

Kulkarni-Kale U, Bhosle SG, Manjari GS, Joshi M, Bansode S, Kolaskar AS.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S12.

15.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

16.

Gene3D: comprehensive structural and functional annotation of genomes.

Yeats C, Lees J, Reid A, Kellam P, Martin N, Liu X, Orengo C.

Nucleic Acids Res. 2008 Jan;36(Database issue):D414-8. Epub 2007 Nov 21.

17.

Database similarity searches.

Plewniak F.

Methods Mol Biol. 2008;484:361-78. doi: 10.1007/978-1-59745-398-1_24.

PMID:
18592192
18.

New in protein structure and function annotation: hotspots, single nucleotide polymorphisms and the 'Deep Web'.

Bromberg Y, Yachdav G, Ofran Y, Schneider R, Rost B.

Curr Opin Drug Discov Devel. 2009 May;12(3):408-19. Review.

PMID:
19396742
19.

Mining sequence annotation databanks for association patterns.

Artamonova II, Frishman G, Gelfand MS, Frishman D.

Bioinformatics. 2005 Nov 1;21 Suppl 3:iii49-57.

PMID:
16306393
20.

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

BMC Bioinformatics. 2008 Jan 25;9:52. doi: 10.1186/1471-2105-9-52.

Supplemental Content

Support Center