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Items: 1 to 20 of 62

1.

Protein coding potential of retroviruses and other transposable elements in vertebrate genomes.

Zdobnov EM, Campillos M, Harrington ED, Torrents D, Bork P.

Nucleic Acids Res. 2005 Feb 16;33(3):946-54. Print 2005.

2.

Transposable elements as drivers of genomic and biological diversity in vertebrates.

Böhne A, Brunet F, Galiana-Arnoux D, Schultheis C, Volff JN.

Chromosome Res. 2008;16(1):203-15. doi: 10.1007/s10577-007-1202-6. Review.

PMID:
18293113
3.

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.

Harrison PM, Zheng D, Zhang Z, Carriero N, Gerstein M.

Nucleic Acids Res. 2005 Apr 28;33(8):2374-83. Print 2005.

4.

Origin and evolution of the RIG-I like RNA helicase gene family.

Zou J, Chang M, Nie P, Secombes CJ.

BMC Evol Biol. 2009 Apr 28;9:85. doi: 10.1186/1471-2148-9-85.

5.

Analysis of the complement and molecular evolution of tRNA genes in cow.

Tang DT, Glazov EA, McWilliam SM, Barris WC, Dalrymple BP.

BMC Genomics. 2009 Apr 24;10:188. doi: 10.1186/1471-2164-10-188.

6.

Genome-wide analysis of mammalian DNA segment fusion/fission.

Zhang Z, Sun H, Zhang Y, Zhao Y, Shi B, Sun S, Lu H, Bu D, Ling L, Chen R.

J Theor Biol. 2006 May 21;240(2):200-8. Epub 2005 Nov 14.

PMID:
16289610
7.

Cracking the genome's second code: enhancer detection by combined phylogenetic footprinting and transgenic fish and frog embryos.

Allende ML, Manzanares M, Tena JJ, Feijóo CG, Gómez-Skarmeta JL.

Methods. 2006 Jul;39(3):212-9.

PMID:
16806968
8.

TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates.

Levy A, Sela N, Ast G.

Nucleic Acids Res. 2008 Jan;36(Database issue):D47-52. Epub 2007 Nov 5.

9.

Human-specific endogenous retroviruses.

Buzdin A.

ScientificWorldJournal. 2007 Nov 26;7:1848-68. Review.

10.

Identifying synonymous regulatory elements in vertebrate genomes.

Ovcharenko I, Nobrega MA.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W403-7.

11.

In vivo enhancer analysis of human conserved non-coding sequences.

Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM.

Nature. 2006 Nov 23;444(7118):499-502. Epub 2006 Nov 5.

PMID:
17086198
12.

PIF-like transposons are common in drosophila and have been repeatedly domesticated to generate new host genes.

Casola C, Lawing AM, Betrán E, Feschotte C.

Mol Biol Evol. 2007 Aug;24(8):1872-88. Epub 2007 Jun 7.

PMID:
17556756
13.

Conserved distances between vertebrate highly conserved elements.

Sun H, Skogerbø G, Chen R.

Hum Mol Genet. 2006 Oct 1;15(19):2911-22. Epub 2006 Aug 21.

PMID:
16923797
14.

Genomic structure and expression of Jmjd6 and evolutionary analysis in the context of related JmjC domain containing proteins.

Hahn P, Böse J, Edler S, Lengeling A.

BMC Genomics. 2008 Jun 18;9:293. doi: 10.1186/1471-2164-9-293.

15.

New mobile genetic elements in Cupriavidus metallidurans CH34, their possible roles and occurrence in other bacteria.

Van Houdt R, Monchy S, Leys N, Mergeay M.

Antonie Van Leeuwenhoek. 2009 Aug;96(2):205-26. doi: 10.1007/s10482-009-9345-4. Epub 2009 Apr 24.

PMID:
19390985
16.

Cellular genes derived from Gypsy/Ty3 retrotransposons in mammalian genomes.

Volff JN.

Ann N Y Acad Sci. 2009 Oct;1178:233-43. doi: 10.1111/j.1749-6632.2009.05005.x.

PMID:
19845640
17.

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes.

Kurtz S, Narechania A, Stein JC, Ware D.

BMC Genomics. 2008 Oct 31;9:517. doi: 10.1186/1471-2164-9-517.

18.

DomainSieve: a protein domain-based screen that led to the identification of dam-associated genes with potential link to DNA maintenance.

Brézellec P, Hoebeke M, Hiet MS, Pasek S, Ferat JL.

Bioinformatics. 2006 Aug 15;22(16):1935-41. Epub 2006 Jun 20.

PMID:
16787973
19.

Functional impact of transposable elements using bioinformatic analysis and a comparative genomic approach.

Kim DS, Huh JW, Kim YH, Park SJ, Chang KT.

Mol Cells. 2010 Jul;30(1):77-87. doi: 10.1007/s10059-010-0091-2. Epub 2010 Jul 14.

20.

RetroTector online, a rational tool for analysis of retroviral elements in small and medium size vertebrate genomic sequences.

Sperber G, Lövgren A, Eriksson NE, Benachenhou F, Blomberg J.

BMC Bioinformatics. 2009 Jun 16;10 Suppl 6:S4. doi: 10.1186/1471-2105-10-S6-S4.

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